3VP7

Crystal structure of the beta-alpha repeated, autophagy-specific (BARA) domain of Vps30/Atg6

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	BARA domain-like	8045362	4004436	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	BARA domain-like	8090325	3002431	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	APG6	e3vp7A1	A: a+b duplicates or obligate multimers	X: Vacuolar protein sorting-associated protein 30 BARA domain (From Topology)	H: Vacuolar protein sorting-associated protein 30 BARA domain (From Topology)	T: Vacuolar protein sorting-associated protein 30 BARA domain	F: APG6	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.418.40	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF04111	Apg6 BARA domain (APG6)	Apg6 BARA domain	In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells [1]. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the ...	In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells [1]. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [2]. This entry is the Beta-Alpha repeated, autophagy-specific (BARA) domain [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Vacuolar protein sorting-associated protein 30	phosphatidylinositol 3-kinase binding protein binding binding protein-macromolecule adaptor activity molecular adaptor activity	localization cellular localization late endosome to vacuole transport transport establishment of localization in cell cellular process vacuolar transport intracellular transport establishment of localization vesicle-mediated transport cellular response to stimulus response to nutrient levels cellular response to nitrogen levels response to stimulus localization cellular localization late endosome to vacuole transport transport establishment of localization in cell cellular process vacuolar transport intracellular transport establishment of localization vesicle-mediated transport cellular response to stimulus response to nutrient levels cellular response to nitrogen levels response to stimulus cellular response to starvation cellular response to nutrient levels cellular response to stress cellular response to nitrogen starvation response to stress response to starvation autophagosome assembly catabolic process organelle assembly vacuole organization macroautophagy cellular metabolic process autophagy autophagosome organization cellular component biogenesis cellular component organization cellular catabolic process organelle organization cellular component assembly metabolic process cellular component organization or biogenesis process utilizing autophagic mechanism phosphatidylinositol metabolic process glycerophospholipid biosynthetic process cellular biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phosphatidylinositol phosphate biosynthetic process phospholipid biosynthetic process phosphatidylinositol biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process cellular lipid metabolic process phosphate-containing compound metabolic process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process piecemeal microautophagy of the nucleus microautophagy nucleophagy autophagy of peroxisome pexophagy protein localization establishment of protein localization nitrogen compound transport protein targeting establishment of protein localization to vacuole protein localization to vacuole establishment of protein localization to organelle protein transport cellular macromolecule localization macromolecule localization protein localization to organelle protein targeting to vacuole intracellular protein transport endosomal transport cytosolic transport retrograde transport, endosome to Golgi cytoplasm to vacuole targeting by the Cvt pathway cellular response to potassium ion starvation mitophagy autophagy of mitochondrion	organelle membrane contact site organelle vacuole-isolation membrane contact site cellular anatomical entity intracellular anatomical structure cytoplasm cytosol phagophore assembly site membrane membrane phagophore assembly site phosphatidylinositol 3-kinase complex, class III, type II protein-containing complex catalytic complex membrane protein complex organelle membrane contact site organelle vacuole-isolation membrane contact site cellular anatomical entity intracellular anatomical structure cytoplasm cytosol phagophore assembly site membrane membrane phagophore assembly site phosphatidylinositol 3-kinase complex, class III, type II protein-containing complex catalytic complex membrane protein complex transferase complex phosphatidylinositol 3-kinase complex transferase complex, transferring phosphorus-containing groups phosphatidylinositol 3-kinase complex, class III extrinsic component of membrane vacuolar membrane membrane-bounded organelle storage vacuole lytic vacuole vacuole intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle membrane fungal-type vacuole membrane Golgi membrane Golgi apparatus endomembrane system phosphatidylinositol 3-kinase complex, class III, type I endosome membrane endosome intracellular vesicle cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR007243	Atg6/Beclin	Family
A	IPR041691	Atg6/beclin, coiled-coil domain	Domain
A	IPR038274	Atg6/Beclin C-terminal domain superfamily	Homologous Superfamily
A	IPR040455	Atg6, BARA domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.