3U5N
Crystal structure of the complex of TRIM33 PHD-Bromo and H3(1-20)K9me3K14ac histone peptide
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Bromodomain | e3u5nA4 | A: alpha bundles | X: Bromodomain-like | H: Bromodomain (From Topology) | T: Bromodomain | F: Bromodomain | ECOD (1.6) |
A | PHD_1 | e3u5nA3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD_1 | ECOD (1.6) |
C [auth B] | Bromodomain | e3u5nB8 | A: alpha bundles | X: Bromodomain-like | H: Bromodomain (From Topology) | T: Bromodomain | F: Bromodomain | ECOD (1.6) |
C [auth B] | PHD_1 | e3u5nB7 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
A | 1.20.920.10 | Mainly Alpha | Up-down Bundle | Histone Acetyltransferase | Chain A | CATH (4.3.0) |
C [auth B] | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
C [auth B] | 1.20.920.10 | Mainly Alpha | Up-down Bundle | Histone Acetyltransferase | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF00439 | Bromodomain (Bromodomain) | Bromodomain | Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3]. | Domain |
A, C [auth B] | PF00628 | PHD-finger (PHD) | PHD-finger | PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site |
A, C [auth B] | IPR001965 | Zinc finger, PHD-type | Domain |
A, C [auth B] | IPR000315 | B-box-type zinc finger | Domain |
A, C [auth B] | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
A, C [auth B] | IPR001487 | Bromodomain | Domain |
A, C [auth B] | IPR036427 | Bromodomain-like superfamily | Homologous Superfamily |
A, C [auth B] | IPR019787 | Zinc finger, PHD-finger | Domain |
A, C [auth B] | IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily |
A, C [auth B] | IPR003649 | B-box, C-terminal | Domain |
A, C [auth B] | IPR001841 | Zinc finger, RING-type | Domain |
A, C [auth B] | IPR019786 | Zinc finger, PHD-type, conserved site | Conserved Site |
B [auth C], D | IPR009072 | Histone-fold | Homologous Superfamily |
B [auth C], D | IPR007125 | Histone H2A/H2B/H3 | Domain |
B [auth C], D | IPR000164 | Histone H3/CENP-A | Family |