3U28
Crystal structure of a Cbf5-Nop10-Gar1 complex from Saccharomyces cerevisiae
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d3u28b_ | Small proteins | Rubredoxin-like | Nop10-like SnoRNP | Nucleolar RNA-binding protein Nop10-like | H/aca ribonucleoprotein complex subunit 3 | yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PUA | e3u28A3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PUA | ECOD (1.6) |
A | TruB_N | e3u28A4 | A: a+b two layers | X: Alpha-beta plaits | H: Pseudouridine synthase (From Topology) | T: Pseudouridine synthase | F: TruB_N | ECOD (1.6) |
B | Nop10p | e3u28B1 | A: few secondary structure elements | X: Rubredoxin-like | H: Nucleolar RNA-binding protein Nop10-like (From Topology) | T: Nucleolar RNA-binding protein Nop10-like | F: Nop10p | ECOD (1.6) |
C | Gar1 | e3u28C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Gar1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.130.10 | Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase | Chain: A, domain 4 | CATH (4.3.0) |
A | 3.30.2350.10 | Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | Pseudouridine synthase | CATH (4.3.0) |
B | 4.10.80.300 | Few Secondary Structures | Irregular | Rhinovirus 14, subunit 4 | CATH (4.3.0) | |
C | 2.40.10.230 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Probable tRNA pseudouridine synthase domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08068 | DKCLD (NUC011) domain (DKCLD) | DKCLD (NUC011) domain | This is a TruB_N/PUA domain associated N-terminal domain of Dyskerin-like proteins [1]. | Domain | |
PF16198 | tRNA pseudouridylate synthase B C-terminal domain (TruB_C_2) | tRNA pseudouridylate synthase B C-terminal domain | - | Family | |
PF01509 | TruB family pseudouridylate synthase (N terminal domain) (TruB_N) | TruB family pseudouridylate synthase (N terminal domain) | - | Family | |
PF01472 | PUA domain (PUA) | PUA domain | - | Family | |
PF04135 | Nucleolar RNA-binding protein, Nop10p family (Nop10p) | Nucleolar RNA-binding protein, Nop10p family | - | Family | |
PF04410 | Gar1/Naf1 RNA binding region (Gar1) | Gar1/Naf1 RNA binding region | Gar1 is a small nucleolar RNP that is required for pre-mRNA processing and pseudouridylation [1]. It is co-immunoprecipitated with the H/ACA families of snoRNAs. This family represents the conserved central region of Gar1. This region is necessary an ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015947 | PUA-like superfamily | Homologous Superfamily | |
IPR020103 | Pseudouridine synthase, catalytic domain superfamily | Homologous Superfamily | |
IPR004521 | Uncharacterised domain CHP00451 | Domain | |
IPR002501 | Pseudouridine synthase II, N-terminal | Domain | |
IPR036974 | PUA domain superfamily | Homologous Superfamily | |
IPR004802 | tRNA pseudouridine synthase B family | Family | |
IPR032819 | tRNA pseudouridylate synthase B, C-terminal | Domain | |
IPR012960 | Dyskerin-like | Domain | |
IPR002478 | PUA domain | Domain | |
IPR007264 | H/ACA ribonucleoprotein complex, subunit Nop10 | Family | |
IPR036756 | H/ACA ribonucleoprotein complex, subunit Nop10 superfamily | Homologous Superfamily | |
IPR038664 | H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain | Homologous Superfamily | |
IPR007504 | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 | Family | |
IPR009000 | Translation protein, beta-barrel domain superfamily | Homologous Superfamily |