3TGO
Crystal structure of the E. coli BamCD complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Outer membrane lipoprotein-like | 8048891 | 4006249 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | TPR-like | 8058058 | 3001345 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | TPR-like | 8058058 | 3001345 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Flpp3/BamC-like | 8104065 | 3002816 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Flpp3/BamC-like | 8104065 | 3002816 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | YfiO | e3tgoA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: YfiO | ECOD (1.6) |
B | YfiO | e3tgoB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: YfiO | ECOD (1.6) |
C | Lipoprotein_18_1 | e3tgoC1 | A: a+b two layers | X: TBP-like | H: Bet v1-like (From Topology) | T: Bet v1-like | F: Lipoprotein_18_1 | ECOD (1.6) |
D | Lipoprotein_18_1 | e3tgoD1 | A: a+b two layers | X: TBP-like | H: Outer membrane protein assembly factor BamC (From Topology) | T: Outer membrane protein assembly factor BamC | F: Lipoprotein_18_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (4.3.0) |
B | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (4.3.0) |
C | 3.30.530.50 | Alpha Beta | 2-Layer Sandwich | Alpha-D-Glucose-1,6-Bisphosphate | Chain A, domain 4 | CATH (4.3.0) |
D | 3.30.530.50 | Alpha Beta | 2-Layer Sandwich | Alpha-D-Glucose-1,6-Bisphosphate | Chain A, domain 4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13525 | Outer membrane lipoprotein (YfiO) | Outer membrane lipoprotein | - | Repeat | |
PF06804 | NlpB/DapX lipoprotein (Lipoprotein_18) | NlpB/DapX lipoprotein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR039565 | Outer membrane lipoprotein BamD-like | Domain | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
IPR017689 | Outer membrane protein assembly factor BamD | Family | |
IPR010653 | NlpB/DapX lipoprotein | Family | |
IPR042268 | Outer membrane protein assembly factor BamC, C-terminal | Homologous Superfamily | |
IPR014524 | Outer membrane protein assembly factor BamC | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Omp85-TpsB transporters (n=16,S=20,22) | OMP insertion (Bam complex) porin (n=16,S=22) |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Omp85-TpsB Outer Membrane Transporter Superfamily | BamCD complex of the Bam β-barrel assembly machine |