3TDU
N-terminal acetylation acts as an avidity enhancer within an interconnected multiprotein complex: Structure of a human Cul1WHB-Dcn1P-acetylated Ubc12N complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | EF-hand | 8055669 | 3001983 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | EF-hand | 8055670 | 3001983 | SCOP2B (2021-05-27) |
B | SCOP2 Family | DCNL PONY Domain-like | 8051685 | 4007471 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | EF-hand | 8055669 | 3001983 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | EF-hand | 8055670 | 3001983 | SCOP2 (2021-05-27) |
C | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003463 | 3000034 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003463 | 3000034 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e3tduA1 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF03556 | e3tduA2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: PF03556 | ECOD (1.6) |
B | F_UNCLASSIFIED | e3tduB2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF03556 | e3tduB3 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: PF03556 | ECOD (1.6) |
C | PF10557 | e3tduC1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF10557 | ECOD (1.6) |
D | PF10557 | e3tduD1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF10557 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.238.10 | Mainly Alpha | Orthogonal Bundle | Recoverin | domain 1 | CATH (4.3.0) |
B | 1.10.238.10 | Mainly Alpha | Orthogonal Bundle | Recoverin | domain 1 | CATH (4.3.0) |
C | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
D | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03556 | Cullin binding (Cullin_binding) | Cullin binding | - | Family | |
PF10557 | Cullin protein neddylation domain (Cullin_Nedd8) | Cullin protein neddylation domain | This is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cu ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR042460 | DCN1-like, PONY binding domain | Homologous Superfamily | |
IPR009060 | UBA-like superfamily | Homologous Superfamily | |
IPR005176 | Potentiating neddylation domain | Domain | |
IPR014764 | Defective-in-cullin neddylation protein | Family | |
IPR045093 | Cullin | Family | |
IPR019559 | Cullin protein, neddylation domain | Domain | |
IPR016158 | Cullin homology domain | Domain | |
IPR016157 | Cullin, conserved site | Conserved Site | |
IPR001373 | Cullin, N-terminal | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR036317 | Cullin homology domain superfamily | Homologous Superfamily | |
IPR016159 | Cullin repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain | |
IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily | |
IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
ACE | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 | :