3SY8
Crystal structure of the response regulator RocR
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00563 | e3sy8A4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: EAL domain (From Topology) | T: EAL domain | F: PF00563 | ECOD (1.6) |
A | PF00072 | e3sy8A3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF00072 | ECOD (1.6) |
B | PF00563 | e3sy8B1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: EAL domain (From Topology) | T: EAL domain | F: PF00563 | ECOD (1.6) |
B | PF00072 | e3sy8B2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF00072 | ECOD (1.6) |
C | PF00563 | e3sy8C1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: EAL domain (From Topology) | T: EAL domain | F: PF00563 | ECOD (1.6) |
C | PF00072 | e3sy8C2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF00072 | ECOD (1.6) |
D | PF00563 | e3sy8D4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: EAL domain (From Topology) | T: EAL domain | F: PF00563 | ECOD (1.6) |
D | PF00072 | e3sy8D3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF00072 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
A | 3.20.20.450 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | EAL domain | CATH (4.3.0) |
B | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
B | 3.20.20.450 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | EAL domain | CATH (4.3.0) |
C | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
C | 3.20.20.450 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | EAL domain | CATH (4.3.0) |
D | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
D | 3.20.20.450 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | EAL domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00072 | Response regulator receiver domain (Response_reg) | Response regulator receiver domain | This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain. | Domain | |
PF00563 | EAL domain (EAL) | EAL domain | This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function [1]. The domain contains many conserved acidic residues tha ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011006 | CheY-like superfamily | Homologous Superfamily | |
IPR001789 | Signal transduction response regulator, receiver domain | Domain | |
IPR050706 | Cyclic di-GMP phosphodiesterase | Family | |
IPR001633 | EAL domain | Domain | |
IPR035919 | EAL domain superfamily | Homologous Superfamily |