3SUC
Crystal structure of the pre-mature bacteriophage phi29 gene product 12
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_G2_C | e3sucA2 | A: beta barrels | X: beta-clip | H: Head decoration protein D (gpD, major capsid protein D) (From Topology) | T: Head decoration protein D (gpD, major capsid protein D) | F: Peptidase_G2_C | ECOD (1.6) |
A | Glyco_hydro_28 | e3sucA1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Glyco_hydro_28 | ECOD (1.6) |
A | Peptidase_G2_N | e3sucA3 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Adhesin YadA, collagen-binding domain (From Topology) | T: Adhesin YadA, collagen-binding domain | F: Peptidase_G2_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
A | 2.160.10.20 | Mainly Beta | 3 Solenoid | UDP N-Acetylglucosamine Acyltransferase | domain 1 | CATH (4.3.0) |
A | 2.40.300.10 | Mainly Beta | Beta Barrel | Virus Head Decoration Protein | Chain: A, | CATH (4.3.0) |
A | 4.10.80.40 | Few Secondary Structures | Irregular | Rhinovirus 14, subunit 4 | succinate dehydrogenase protein domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11962 | Peptidase_G2, IMC autoproteolytic cleavage domain (Peptidase_G2) | Peptidase_G2, IMC autoproteolytic cleavage domain | This domain is found at the very C-terminus of bacteriophage parallel beta-helical tailspike proteins. It carries the enzymic residues that induce autoproteolytic cleavage to bring about maturation of the folding process of the helix in a chaperone-l ... | Domain | |
PF12708 | Pectate lyase superfamily protein (Pectate_lyase_3) | Pectate lyase superfamily protein | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006626 | Parallel beta-helix repeat | Repeat | |
IPR012334 | Pectin lyase fold | Homologous Superfamily | |
IPR021865 | Peptidase G2, IMC autoproteolytic cleavage domain | Domain | |
IPR024535 | Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain | Domain | |
IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |