Annotations: 3SQB

Structure of the major type 1 pilus subunit FimA bound to the FimC chaperone

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Bacterial adhesin-like	8098074	3000723	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bacterial adhesin-like	8098074	3000723	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Periplasmic chaperone C-domain	8035665	3000998	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PapD-like	8055315	3002067	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Periplasmic chaperone C-domain	8035665	3000998	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PapD-like	8055315	3002067	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Periplasmic chaperone C-domain	8035665	3000998	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PapD-like	8055315	3002067	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	TbpB_A	e3sqbH1	A: alpha arrays	X: Ribosomal protein L31e-like	H: Reductive activator for corrinoid/iron-sulfur protein second domain	T: Reductive activator for corrinoid/iron-sulfur protein second domain	F: TbpB_A	ECOD (v295.2)
F	SpaA	e3sqbF2	A: alpha arrays	X: Fusion glycoprotein F2	H: Fusion glycoprotein F2	T: Fusion glycoprotein F2	F: SpaA	ECOD (v295.2)
D	Dicer_dsRBD	e3sqbD2	A: alpha arrays	X: DEATH domain	H: PH domain-like	T: PH domain-like	F: Dicer_dsRBD	ECOD (v295.2)
B	Dicer_dsRBD	e3sqbB2	A: alpha arrays	X: DEATH domain	H: PH domain-like	T: PH domain-like	F: Dicer_dsRBD	ECOD (v295.2)
G	Pkinase, PK_Tyr_Ser-Thr	e3sqbG1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: Pkinase, PK_Tyr_Ser-Thr	ECOD (v295.2)
E	VEGFR-1-like_Ig-like	e3sqbE3	A: alpha arrays	X: Fusion glycoprotein F2	H: Fusion glycoprotein F2	T: Fusion glycoprotein F2	F: VEGFR-1-like_Ig-like	ECOD (v295.2)
C	VEGFR-1-like_Ig-like	e3sqbC3	A: alpha arrays	X: Fusion glycoprotein F2	H: Fusion glycoprotein F2	T: Fusion glycoprotein F2	F: VEGFR-1-like_Ig-like	ECOD (v295.2)
A	Copper-bind	e3sqbA1	A: alpha arrays	X: P-loop domains-like	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Copper-bind	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.40.1090	Mainly Beta	Sandwich	Immunoglobulin-like	Fimbrial-type adhesion domain	CATH (4.3.0)
B	2.60.40.1090	Mainly Beta	Sandwich	Immunoglobulin-like	Fimbrial-type adhesion domain	CATH (4.3.0)
E	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G	PF02753	Pili assembly chaperone PapD, C-terminal domain (PapD_C)	Pili assembly chaperone PapD, C-terminal domain	Ig-like beta-sandwich fold. This domain is the C-terminal part of the pilus and flagellar-assembly chaperone protein PapD.	Domain
A, C, E, G	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain (PapD_N)	Pili and flagellar-assembly chaperone, PapD N-terminal domain	C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H	Type-1 fimbrial protein, A chain	identical protein binding protein binding binding	cell adhesion involved in biofilm formation cell aggregation biofilm formation biological process involved in intraspecies interaction between organisms cell-substrate adhesion single-species biofilm formation aggregation of unicellular organisms submerged biofilm formation cell adhesion involved in single-species biofilm formation cell adhesion cellular process single-species submerged biofilm formation	pilus cell projection cellular anatomical structure
A, C, E, G	Chaperone protein fimC	protein folding chaperone	protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation cellular component organization cell wall organization or biogenesis cell wall organization cellular component organization or biogenesis protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation cellular component organization cell wall organization or biogenesis cell wall organization cellular component organization or biogenesis external encapsulating structure organization	cellular anatomical structure extracellular region outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H	IPR000259	Fimbrial-type adhesion domain	Domain
B, D, F, H	IPR036937	Fimbrial-type adhesion domain superfamily	Homologous Superfamily
B, D, F, H	IPR008966	Adhesion domain superfamily	Homologous Superfamily
B, D, F, H	IPR050263	Bacterial fimbrial adherence	Family
A, C, E, G	IPR036316	Pili assembly chaperone, C-terminal domain superfamily	Homologous Superfamily
A, C, E, G	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, C, E, G	IPR050643	Periplasmic Pilus Chaperone	Family
A, C, E, G	IPR001829	Chaperone protein FimC-like	Family
A, C, E, G	IPR016148	Pili assembly chaperone, C-terminal	Domain
A, C, E, G	IPR008962	PapD-like superfamily	Homologous Superfamily
A, C, E, G	IPR016147	Pili assembly chaperone, N-terminal	Domain
A, C, E, G	IPR018046	Pili assembly chaperone, conserved site	Conserved Site