3RW6
Structure of nuclear RNA export factor TAP bound to CTE RNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | L domain-like | 8038331 | 3001010 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RNA-binding domain, RBD | 8038329 | 3000110 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | L domain-like | 8038331 | 3001010 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | RNA-binding domain, RBD | 8038329 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | LRR_9 | e3rw6A3 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_9 | ECOD (1.6) |
A | Tap-RNA_bind | e3rw6A4 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: Tap-RNA_bind | ECOD (1.6) |
D [auth B] | LRR_9 | e3rw6B3 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_9 | ECOD (1.6) |
D [auth B] | Tap-RNA_bind | e3rw6B4 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: Tap-RNA_bind | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
A | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
D [auth B] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
D [auth B] | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B] | PF09162 | Tap, RNA-binding (Tap-RNA_bind) | Tap, RNA-binding | Members of this family adopt a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. They are mainly found in mRNA export factors, and mediate the sequence nonspecific nuclear export o ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth B] | IPR030217 | Nuclear RNA export factor | Family |
A, D [auth B] | IPR032710 | NTF2-like domain superfamily | Homologous Superfamily |
A, D [auth B] | IPR015245 | Nuclear RNA export factor Tap, RNA-binding domain | Domain |
A, D [auth B] | IPR005637 | TAP C-terminal (TAP-C) domain | Domain |
A, D [auth B] | IPR001611 | Leucine-rich repeat | Repeat |
A, D [auth B] | IPR018222 | Nuclear transport factor 2, eukaryote | Domain |
A, D [auth B] | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily |
A, D [auth B] | IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily |
A, D [auth B] | IPR009060 | UBA-like superfamily | Homologous Superfamily |
A, D [auth B] | IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |
A, D [auth B] | IPR002075 | Nuclear transport factor 2 domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A, D [auth B] | Q9UBU9 | :