3RTA
Crystal structure of tm0922, a fusion of a domain of unknown function and ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Thermotoga maritima soaked with Acetyl Coenzyme A
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3rtaa2 | Alpha and beta proteins (a/b) | Ribokinase-like | Ribokinase-like | YjeF C-terminal domain-like | Hypothetical protein TM0922, C-terminal domain | (Thermotoga maritima MSB8 ) [TaxId: 243274 ], | SCOPe (2.08) |
A | d3rtaa1 | Alpha and beta proteins (a/b) | YjeF N-terminal domain-like | YjeF N-terminal domain-like | YjeF N-terminal domain-like | Hypothetical protein TM0922, N-terminal domain | (Thermotoga maritima MSB8 ) [TaxId: 243274 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03853 | e3rtaA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: PF03853 | ECOD (1.6) |
A | PF01256 | e3rtaA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Ribokinase-like (From Topology) | T: Ribokinase-like | F: PF01256 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.10260 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | YjeF N-terminal domain | CATH (4.3.0) |
A | 3.40.1190.20 | Alpha Beta | 3-Layer(aba) Sandwich | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | Ribokinase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01256 | Carbohydrate kinase (Carb_kinase) | Carbohydrate kinase | - | Family | |
PF03853 | YjeF-related protein N-terminus (YjeF_N) | YjeF-related protein N-terminus | YjeF-N domain is a novel version of the Rossmann fold with a set of catalytic residues and structural features that are different from the conventional dehydrogenases [1]. YjeF-N domain is fused to Ribokinases in bacteria (YjeF), where they may be ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000631 | ATP/ADP-dependent (S)-NAD(P)H-hydrate dehydratase | Domain | |
IPR017953 | Carbohydrate kinase, predicted, conserved site | Conserved Site | |
IPR036652 | YjeF N-terminal domain superfamily | Homologous Superfamily | |
IPR029056 | Ribokinase-like | Homologous Superfamily | |
IPR004443 | YjeF N-terminal domain | Domain | |
IPR030677 | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | Family |