3RMP
Structural basis for the recognition of attP substrates by P4-like integrases
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Arm-DNA-bind_3 | e3rmpA1 | A: a+b two layers | X: DNA-binding domain | H: GCC-box binding domain-like (From Topology) | T: GCC-box binding domain-like | F: Arm-DNA-bind_3 | ECOD (1.6) |
B [auth C] | Arm-DNA-bind_3 | e3rmpC1 | A: a+b two layers | X: DNA-binding domain | H: GCC-box binding domain-like (From Topology) | T: GCC-box binding domain-like | F: Arm-DNA-bind_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.160.390 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Integrase, DNA-binding domain | CATH (4.3.0) |
B [auth C] | 3.30.160.390 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Integrase, DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C] | PF13356 | Arm DNA-binding domain (Arm-DNA-bind_3) | Arm DNA-binding domain | This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C] | IPR011010 | DNA breaking-rejoining enzyme, catalytic core | Homologous Superfamily |
A, B [auth C] | IPR038488 | Integrase, DNA-binding domain superfamily | Homologous Superfamily |
A, B [auth C] | IPR050808 | Phage Integrase | Family |
A, B [auth C] | IPR053876 | Phage integrase, central domain | Domain |
A, B [auth C] | IPR025166 | Integrase, DNA-binding domain | Domain |
A, B [auth C] | IPR010998 | Integrase/recombinase, N-terminal | Homologous Superfamily |
A, B [auth C] | IPR044068 | Core-binding (CB) domain | Domain |
A, B [auth C] | IPR002104 | Integrase, catalytic domain | Domain |
A, B [auth C] | IPR013762 | Integrase-like, catalytic domain superfamily | Homologous Superfamily |