Annotations: 3RGD

Iron loaded frog M ferritin. Short soaking time

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
X	d3rgdx_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
W	d3rgdw_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
V	d3rgdv_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
U	d3rgdu_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
T	d3rgdt_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
S	d3rgds_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
R	d3rgdr_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
Q	d3rgdq_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
P	d3rgdp_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
O	d3rgdo_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
N	d3rgdn_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
M	d3rgdm_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
L	d3rgdl_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
K	d3rgdk_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
J	d3rgdj_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
I	d3rgdi_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
H	d3rgdh_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
G	d3rgdg_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
F	d3rgdf_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	(Apo)ferritin	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
E	d3rgde_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
D	d3rgdd_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
C	d3rgdc_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
B	d3rgdb_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
A	d3rgda_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	RRM_1	e3rgdX1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
W	RRM_1	e3rgdW1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
V	RRM_1	e3rgdV1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
U	RRM_1	e3rgdU1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
T	RRM_1	e3rgdT1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
S	RRM_1	e3rgdS1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
R	RRM_1	e3rgdR1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
Q	RRM_1	e3rgdQ1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
P	RRM_1	e3rgdP1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
O	RRM_1	e3rgdO1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
N	RRM_1	e3rgdN1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
M	RRM_1	e3rgdM1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
L	RRM_1	e3rgdL1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
K	RRM_1	e3rgdK1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
J	RRM_1	e3rgdJ1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
I	RRM_1	e3rgdI1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
H	RRM_1	e3rgdH1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
G	RRM_1	e3rgdG1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
F	RRM_1	e3rgdF1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
E	RRM_1	e3rgdE1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
D	RRM_1	e3rgdD1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
C	RRM_1	e3rgdC1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
B	RRM_1	e3rgdB1	A: beta barrels	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.2)
A	Pkinase, Kdo	e3rgdA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Pkinase, Kdo	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
X	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
W	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
V	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
U	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
T	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
S	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
R	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
Q	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
P	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
O	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
N	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
M	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	Ferritin, middle subunit	cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR009040	Ferritin-like diiron domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR001519	Ferritin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR014034	Ferritin, conserved site	Conserved Site