3RFZ
Crystal structure of the FimD usher bound to its cognate FimC:FimH substrate
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Bacterial adhesin-like | 8032980 | 3000723 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Bacterial adhesin-like | 8032980 | 3000723 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | FimD/Slr0280 N-terminal domain-like | 8039575 | 3001001 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | FimD/Slr0280 N-terminal domain-like | 8039575 | 3001001 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Periplasmic chaperone C-domain | 8035665 | 3000998 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PapD-like | 8055315 | 3002067 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Periplasmic chaperone C-domain | 8035665 | 3000998 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | PapD-like | 8055315 | 3002067 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | FimH_man-bind | e3rfzA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: FimH_man-bind | ECOD (1.6) |
A | Fimbrial_1 | e3rfzA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Fimbrial_1 | ECOD (1.6) |
D | FimH_man-bind | e3rfzD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: FimH_man-bind | ECOD (1.6) |
D | Fimbrial_1 | e3rfzD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Fimbrial_1 | ECOD (1.6) |
B | PapC_N | e3rfzB1 | A: beta barrels | X: FimD N-terminal domain-like | H: FimD N-terminal domain-like (From Topology) | T: FimD N-terminal domain-like | F: PapC_N | ECOD (1.6) |
B | Usher_1st | e3rfzB3 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Usher PapC translocation pore (From Topology) | T: Usher PapC translocation pore | F: Usher_1st | ECOD (1.6) |
B | Usher_2nd | e3rfzB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Usher_2nd | ECOD (1.6) |
B | PapC_C | e3rfzB4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: PapC_C | ECOD (1.6) |
B | Usher_3rd | e3rfzB5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: Usher_3rd | ECOD (1.6) |
E | PapC_N | e3rfzE2 | A: beta barrels | X: FimD N-terminal domain-like | H: FimD N-terminal domain-like (From Topology) | T: FimD N-terminal domain-like | F: PapC_N | ECOD (1.6) |
E | Usher_1st | e3rfzE3 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Usher PapC translocation pore (From Topology) | T: Usher PapC translocation pore | F: Usher_1st | ECOD (1.6) |
E | Usher_2nd | e3rfzE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Usher_2nd | ECOD (1.6) |
E | PapC_C | e3rfzE4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: PapC_C | ECOD (1.6) |
E | Usher_3rd | e3rfzE5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: Usher_3rd | ECOD (1.6) |
C | PapD_C | e3rfzC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PapD_C | ECOD (1.6) |
C | PapD_N | e3rfzC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PapD_N | ECOD (1.6) |
F | PapD_C | e3rfzF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PapD_C | ECOD (1.6) |
F | PapD_N | e3rfzF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PapD_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00419 | Fimbrial protein (Fimbrial) | Fimbrial protein | - | Domain | |
PF09160 | FimH, mannose binding (FimH_man-bind) | FimH, mannose binding | Members of this family adopt a secondary structure consisting of a beta sandwich, with nine strands arranged in two sheets in a Greek key topology. They are predominantly found in bacterial mannose-specific adhesins, since they are capable of binding ... | Domain | |
PF00577 | Outer membrane usher protein (Usher) | Outer membrane usher protein | - | Family | |
PF13953 | PapC C-terminal domain (PapC_C) | PapC C-terminal domain | The PapC C-terminal domain is a structural domain found at the C-terminus of the E. coli PapC protein. Pili are assembled using the chaperone usher system. In E.coli this is composed of the chaperone PapD and the usher PapC. This domain represents th ... | Domain | |
PF02753 | Pili assembly chaperone PapD, C-terminal domain (PapD_C) | Pili assembly chaperone PapD, C-terminal domain | Ig-like beta-sandwich fold. This domain is the C-terminal part of the pilus and flagellar-assembly chaperone protein PapD. | Domain | |
PF00345 | Pili and flagellar-assembly chaperone, PapD N-terminal domain (PapD_N) | Pili and flagellar-assembly chaperone, PapD N-terminal domain | C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Fimbrial usher porin (n=24,S=26) | Fimbrial usher porin |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Beta-Barrel Membrane Proteins: Monomeric/Dimeric | P pilus FimD usher bound to FimC:FimH substrate |