3RFN
Epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3rfna_ | Alpha and beta proteins (a+b) | RRF/tRNA synthetase additional domain-like | ThrRS/AlaRS common domain | AlaX-like | automated matches | (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ThrRS/AlaRS editing domain-like | 8042986 | 3001504 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.980.10 | Alpha Beta | 2-Layer Sandwich | Threonyl-tRNA Synthetase | Chain A, domain 2 | CATH (4.3.0) |
A | 3.30.54.20 | Alpha Beta | 2-Layer Sandwich | Replication Terminator Protein | Chain A, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07973 | Threonyl and Alanyl tRNA synthetase second additional domain (tRNA_SAD) | Threonyl and Alanyl tRNA synthetase second additional domain | The catalytically active from of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and thi ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018163 | Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily | Homologous Superfamily |