3RBD
Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesion
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Lesion bypass DNA polymerase (Y-family), little finger domain | 8035589 | 3000579 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ta1206-like | 8055757 | 3001431 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8035590 | 3001272 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8035590 | 3001272 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Lesion bypass DNA polymerase (Y-family), little finger domain | 8035589 | 3000579 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8035590 | 3001272 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8035590 | 3001272 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Ta1206-like | 8055757 | 3001431 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF11798 | e3rbdA6 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF11798 | ECOD (1.6) |
A | PF11799 | e3rbdA2 | A: a+b two layers | X: Reverse ferredoxin | H: Lesion bypass DNA polymerase (Y-family), little finger domain (From Topology) | T: Lesion bypass DNA polymerase (Y-family), little finger domain | F: PF11799 | ECOD (1.6) |
A | PF00817 | e3rbdA5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00817 | ECOD (1.6) |
A | PF00817 | e3rbdA7 | A: a+b three layers | X: Hypothetical protein Ta1206-like (From Topology) | H: Hypothetical protein Ta1206-like (From Topology) | T: Hypothetical protein Ta1206-like | F: PF00817 | ECOD (1.6) |
D [auth B] | PF11798 | e3rbdB6 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF11798 | ECOD (1.6) |
D [auth B] | PF11799 | e3rbdB2 | A: a+b two layers | X: Reverse ferredoxin | H: Lesion bypass DNA polymerase (Y-family), little finger domain (From Topology) | T: Lesion bypass DNA polymerase (Y-family), little finger domain | F: PF11799 | ECOD (1.6) |
D [auth B] | PF00817 | e3rbdB5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00817 | ECOD (1.6) |
D [auth B] | PF00817 | e3rbdB7 | A: a+b three layers | X: Hypothetical protein Ta1206-like (From Topology) | H: Hypothetical protein Ta1206-like (From Topology) | T: Hypothetical protein Ta1206-like | F: PF00817 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.270 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Reverse transcriptase/Diguanylate cyclase domain | CATH (4.3.0) |
A | 3.40.1170.60 | Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | CATH (4.3.0) | |
A | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 3.30.1490.100 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
D [auth B] | 3.30.70.270 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Reverse transcriptase/Diguanylate cyclase domain | CATH (4.3.0) |
D [auth B] | 3.40.1170.60 | Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | CATH (4.3.0) | |
D [auth B] | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
D [auth B] | 3.30.1490.100 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B] | PF00817 | impB/mucB/samB family (IMS) | impB/mucB/samB family | - | Family |
A, D [auth B] | PF11799 | impB/mucB/samB family C-terminal domain (IMS_C) | impB/mucB/samB family C-terminal domain | These proteins are involved in UV protection (Swiss). | Domain |
A, D [auth B] | PF11798 | IMS family HHH motif (IMS_HHH) | IMS family HHH motif | - | Motif |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth B] | IPR001126 | UmuC domain | Domain |
A, D [auth B] | IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |
A, D [auth B] | IPR036775 | DNA polymerase, Y-family, little finger domain superfamily | Homologous Superfamily |
A, D [auth B] | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily |
A, D [auth B] | IPR050116 | DNA polymerase type-Y | Family |
A, D [auth B] | IPR022880 | DNA polymerase IV | Family |
A, D [auth B] | IPR017961 | DNA polymerase, Y-family, little finger domain | Domain |
A, D [auth B] | IPR024728 | DNA polymerase type-Y, HhH motif | Conserved Site |