3PRU
Crystal Structure of Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 1 (fragment 14-158) from Synechocystis sp. PCC 6803, Northeast Structural Genomics Consortium Target SgR182A
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | Phycobilisome linker domain-like | 8052317 | 3002104 | SCOP2B (2021-05-27) |
A [auth C] | SCOP2B Superfamily | Phycobilisome linker domain-like | 8052316 | 3002104 | SCOP2B (2021-05-27) |
B [auth A] | SCOP2B Superfamily | Phycobilisome linker domain-like | 8052316 | 3002104 | SCOP2B (2021-05-27) |
B [auth A] | SCOP2B Superfamily | Phycobilisome linker domain-like | 8052317 | 3002104 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | Phycobilisome linker domain-like | 8052316 | 3002104 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | Phycobilisome linker domain-like | 8052317 | 3002104 | SCOP2B (2021-05-27) |
D | SCOP2 Family | Phycobilisome linker domain-like | 8047743 | 4005795 | SCOP2 (2021-05-27) |
D | SCOP2 Superfamily | Phycobilisome linker domain-like | 8052316 | 3002104 | SCOP2 (2021-05-27) |
D | SCOP2 Superfamily | Phycobilisome linker domain-like | 8052317 | 3002104 | SCOP2 (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF00427 | e3pruC1 | A: alpha arrays | X: PBS linker domain of phycobilisome linker polypeptide (From Topology) | H: PBS linker domain of phycobilisome linker polypeptide (From Topology) | T: PBS linker domain of phycobilisome linker polypeptide | F: PF00427 | ECOD (1.6) |
B [auth A] | PF00427 | e3pruA1 | A: alpha arrays | X: PBS linker domain of phycobilisome linker polypeptide (From Topology) | H: PBS linker domain of phycobilisome linker polypeptide (From Topology) | T: PBS linker domain of phycobilisome linker polypeptide | F: PF00427 | ECOD (1.6) |
C [auth B] | PF00427 | e3pruB1 | A: alpha arrays | X: PBS linker domain of phycobilisome linker polypeptide (From Topology) | H: PBS linker domain of phycobilisome linker polypeptide (From Topology) | T: PBS linker domain of phycobilisome linker polypeptide | F: PF00427 | ECOD (1.6) |
D | PF00427 | e3pruD1 | A: alpha arrays | X: PBS linker domain of phycobilisome linker polypeptide (From Topology) | H: PBS linker domain of phycobilisome linker polypeptide (From Topology) | T: PBS linker domain of phycobilisome linker polypeptide | F: PF00427 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 1.10.3130.20 | Mainly Alpha | Orthogonal Bundle | serine acetyltransferase, domain 1 | Phycobilisome linker domain | CATH (4.3.0) |
B [auth A] | 1.10.3130.20 | Mainly Alpha | Orthogonal Bundle | serine acetyltransferase, domain 1 | Phycobilisome linker domain | CATH (4.3.0) |
C [auth B] | 1.10.3130.20 | Mainly Alpha | Orthogonal Bundle | serine acetyltransferase, domain 1 | Phycobilisome linker domain | CATH (4.3.0) |
D | 1.10.3130.20 | Mainly Alpha | Orthogonal Bundle | serine acetyltransferase, domain 1 | Phycobilisome linker domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth A], C [auth B], D | PF00427 | Phycobilisome Linker polypeptide (PBS_linker_poly) | Phycobilisome Linker polypeptide | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], B [auth A], C [auth B], D | IPR016470 | Phycobilisome linker protein | Family |
A [auth C], B [auth A], C [auth B], D | IPR008213 | CpcD-like domain | Domain |
A [auth C], B [auth A], C [auth B], D | IPR001297 | Phycobilisome linker domain | Domain |
A [auth C], B [auth A], C [auth B], D | IPR038255 | Phycobilisome linker domain superfamily | Homologous Superfamily |