The crystal structure of pregilvocarcin in complex with GilR, an oxidoreductase that catalyzes the terminal step of gilvocarcin biosynthesis
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | Radical_SAM | e3pqbD2 | A: alpha arrays | X: Alpha-beta plaits | H: Phage tail protein-like | T: Transmembrane protein 14A | F: Radical_SAM | ECOD (v295.2) |
| D | e3pqbD1 | A: alpha arrays | X: Single-stranded right-handed beta-helix | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: | ECOD (v295.2) | |
| C | Radical_SAM | e3pqbC2 | A: alpha arrays | X: Alpha-beta plaits | H: Phage tail protein-like | T: Transmembrane protein 14A | F: Radical_SAM | ECOD (v295.2) |
| C | e3pqbC1 | A: alpha arrays | X: Single-stranded right-handed beta-helix | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: | ECOD (v295.2) | |
| B | Radical_SAM | e3pqbB2 | A: alpha arrays | X: Alpha-beta plaits | H: Phage tail protein-like | T: Transmembrane protein 14A | F: Radical_SAM | ECOD (v295.2) |
| B | e3pqbB1 | A: alpha arrays | X: Single-stranded right-handed beta-helix | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: | ECOD (v295.2) | |
| A | Radical_SAM | e3pqbA2 | A: alpha arrays | X: Alpha-beta plaits | H: Phage tail protein-like | T: Transmembrane protein 14A | F: Radical_SAM | ECOD (v295.2) |
| A | e3pqbA1 | A: alpha arrays | X: Single-stranded right-handed beta-helix | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D | 3.30.465.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (4.3.0) |
| D | 3.40.462.20 | Alpha Beta | 3-Layer(aba) Sandwich | Vanillyl-alcohol Oxidase | Chain A, domain 3 | CATH (4.3.0) |
| C | 3.30.465.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (4.3.0) |
| C | 3.40.462.20 | Alpha Beta | 3-Layer(aba) Sandwich | Vanillyl-alcohol Oxidase | Chain A, domain 3 | CATH (4.3.0) |
| B | 3.30.465.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (4.3.0) |
| B | 3.40.462.20 | Alpha Beta | 3-Layer(aba) Sandwich | Vanillyl-alcohol Oxidase | Chain A, domain 3 | CATH (4.3.0) |
| A | 3.30.465.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (4.3.0) |
| A | 3.40.462.20 | Alpha Beta | 3-Layer(aba) Sandwich | Vanillyl-alcohol Oxidase | Chain A, domain 3 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Putative oxidoreductase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR006093 | Oxygen oxidoreductase covalent FAD-binding site | Binding Site | |
| IPR050416 | FAD-linked Oxidoreductases in Biosynthetic Pathways | Family | |
| IPR012951 | Berberine/berberine-like | Domain | |
| IPR036318 | FAD-binding, type PCMH-like superfamily | Homologous Superfamily | |
| IPR016169 | FAD-binding, type PCMH, subdomain 2 | Homologous Superfamily | |
| IPR006094 | FAD linked oxidase, N-terminal | Domain | |
| IPR016166 | FAD-binding domain, PCMH-type | Domain |