3PM0

Structural Characterization of the Complex between Alpha-Naphthoflavone and Human Cytochrome P450 1B1 (CYP1B1)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3pm0a_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Cytochrome P450	8068648	4001206	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome P450	8068649	3001061	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	p450	e3pm0A1	A: alpha arrays	X: Cytochrome P450 (From Topology)	H: Cytochrome P450 (From Topology)	T: Cytochrome P450	F: p450	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Cytochrome P450 1B1	monooxygenase activity oxidoreductase activity catalytic activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen aromatase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding estrogen 16-alpha-hydroxylase activity monooxygenase activity oxidoreductase activity catalytic activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen aromatase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding estrogen 16-alpha-hydroxylase activity steroid hydroxylase activity hydroperoxy icosatetraenoate dehydratase activity hydro-lyase activity lyase activity carbon-oxygen lyase activity organic cyclic compound binding tetrapyrrole binding heme binding	developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development system development icosanoid metabolic process fatty acid metabolic process long-chain fatty acid metabolic process unsaturated fatty acid metabolic process epoxygenase P450 pathway oxoacid metabolic process cellular metabolic process carboxylic acid metabolic process primary metabolic process organic acid metabolic process arachidonic acid metabolic process cellular lipid metabolic process olefinic compound metabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process ovulation cycle rhythmic process estrous cycle multicellular organismal reproductive process toxin metabolic process secondary metabolic process cellular response to stimulus response to ketone response to lipid response to stimulus response to endogenous stimulus cellular response to organic cyclic compound response to progesterone response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone cellular response to progesterone stimulus response to chemical response to steroid hormone cellular response to lipid cellular response to ketone cellular response to steroid hormone stimulus response to organic cyclic compound cellular response to hormone stimulus epithelium migration tissue migration endothelial cell migration ameboidal-type cell migration epithelial cell migration cell migration cell motility regulation of biological process regulation of cellular process negative regulation of cell adhesion mediated by integrin regulation of cell adhesion mediated by integrin regulation of cell adhesion biological regulation negative regulation of biological process negative regulation of cell adhesion cell adhesion cell adhesion mediated by integrin negative regulation of cellular process positive regulation of programmed cell death regulation of apoptotic process positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process blood vessel endothelial cell migration positive regulation of locomotion regulation of cell motility positive regulation of smooth muscle cell migration regulation of smooth muscle cell migration positive regulation of cell migration smooth muscle cell migration muscle cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration locomotion cellular component organization collagen fibril organization extracellular matrix organization cellular component organization or biogenesis supramolecular fiber organization extracellular structure organization external encapsulating structure organization response to glucocorticoid response to corticosteroid response to dexamethasone negative regulation of locomotion negative regulation of cell motility negative regulation of cell migration cellular response to toxic substance response to toxic substance response to polycyclic arene response to 3-methylcholanthrene response to gonadotropin response to follicle-stimulating hormone sensory organ development blood vessel morphogenesis tube development retina vasculature development in camera-type eye eye development retina development in camera-type eye visual system development retina vasculature morphogenesis in camera-type eye vasculature development circulatory system development anatomical structure morphogenesis tube morphogenesis camera-type eye development retinal blood vessel morphogenesis sensory system development blood vessel development response to arsenic-containing substance diterpenoid metabolic process regulation of hormone levels organic hydroxy compound metabolic process alcohol metabolic process hormone metabolic process retinoid metabolic process regulation of biological quality retinol metabolic process terpenoid metabolic process isoprenoid metabolic process primary alcohol metabolic process cellular response to nitrogen compound cellular response to gonadotropin stimulus cellular response to luteinizing hormone stimulus response to organonitrogen compound response to luteinizing hormone response to peptide hormone cellular response to peptide hormone stimulus response to nitrogen compound cellular response to organonitrogen compound membrane lipid metabolic process lipid catabolic process catabolic process membrane lipid catabolic process cellular lipid catabolic process cellular catabolic process sterol metabolic process steroid metabolic process cellular biosynthetic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process regulation of vascular endothelial growth factor production regulation of biosynthetic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression vascular endothelial growth factor production biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process positive regulation of vascular endothelial growth factor production regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process positive regulation of cellular biosynthetic process angiogenesis anatomical structure formation involved in morphogenesis retinal metabolic process cellular aldehyde metabolic process nucleobase-containing compound metabolic process DNA modification macromolecule modification DNA metabolic process nucleic acid metabolic process estrogen metabolic process cell-cell adhesion epithelial cell-cell adhesion endothelial cell-cell adhesion tissue development trabecular meshwork development response to organophosphorus response to purine-containing compound response to cAMP cellular response to cAMP negative regulation of DNA-binding transcription factor activity RNA metabolic process regulation of primary metabolic process RNA biosynthetic process negative regulation of NF-kappaB transcription factor activity nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of molecular function nucleobase-containing compound biosynthetic process regulation of molecular function regulation of DNA-binding transcription factor activity regulation of DNA-templated transcription reactive oxygen species metabolic process positive regulation of reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process positive regulation of protein metabolic process organonitrogen compound biosynthetic process positive regulation of translation post-transcriptional regulation of gene expression protein metabolic process organonitrogen compound metabolic process regulation of protein metabolic process translation regulation of translation cellular response to oxidative stress cellular response to chemical stress cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide response to oxidative stress cellular response to reactive oxygen species cellular response to stress response to stress response to peptide cellular response to tumor necrosis factor response to cytokine cellular response to cytokine stimulus response to tumor necrosis factor cellular response to xenobiotic stimulus xenobiotic metabolic process response to xenobiotic stimulus adrenal gland development endocrine system development gland development benzene-containing compound metabolic process negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation regulation of developmental process regulation of vasculature development positive regulation of developmental process regulation of anatomical structure morphogenesis regulation of multicellular organismal development positive regulation of angiogenesis positive regulation of vasculature development regulation of angiogenesis response to indole-3-methanol response to alcohol positive regulation of cell communication cell surface receptor signaling pathway via STAT positive regulation of signal transduction signaling positive regulation of receptor signaling pathway via STAT regulation of signal transduction positive regulation of receptor signaling pathway via JAK-STAT cell communication positive regulation of response to stimulus regulation of receptor signaling pathway via JAK-STAT signal transduction regulation of signaling cell surface receptor signaling pathway regulation of response to stimulus regulation of cell communication regulation of receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT positive regulation of signaling response to cortisol cellular response to cortisol stimulus cellular response to glucocorticoid stimulus cellular response to corticosteroid stimulus cellular response to alcohol regulation of DNA biosynthetic process positive regulation of nucleobase-containing compound metabolic process positive regulation of DNA biosynthetic process positive regulation of DNA metabolic process DNA biosynthetic process regulation of DNA metabolic process omega-hydroxylase P450 pathway response to nutrient levels response to nutrient intrinsic apoptotic signaling pathway in response to oxidative stress intracellular signal transduction apoptotic signaling pathway intrinsic apoptotic signaling pathway response to estradiol nervous system development ganglion development nitric oxide metabolic process nitric oxide biosynthetic process reactive nitrogen species metabolic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle organelle subcompartment membrane endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle organelle subcompartment membrane endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR002401	Cytochrome P450, E-class, group I	Family
A	IPR017972	Cytochrome P450, conserved site	Conserved Site
A	IPR001128	Cytochrome P450	Family
A	IPR036396	Cytochrome P450 superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q16678	melanoma glaucoma 3, primary infantile, B glaucoma 1, open angle, A squamous cell carcinoma glaucoma 3A Peters anomaly contact dermatitis cutaneous melanoma adenoma Glaucoma 3, Primary Congenital, A microcystic adenoma obesity disorder hydrophthalmos prostate cancer glaucoma melanoma glaucoma 3, primary infantile, B glaucoma 1, open angle, A squamous cell carcinoma glaucoma 3A Peters anomaly contact dermatitis cutaneous melanoma adenoma Glaucoma 3, Primary Congenital, A microcystic adenoma obesity disorder hydrophthalmos prostate cancer glaucoma breast cancer ovarian cancer colorectal cancer papillary adenoma follicular thyroid adenoma glucose intolerance breast carcinoma juvenile open angle glaucoma limb-girdle muscular dystrophy lung cancer diabetes mellitus malignant ependymoma primary open angle glaucoma psoriasis Gaucher disease malignant pancreatic neoplasm Sjogren syndrome ulcerative colitis anterior segment dysgenesis 1 head and neck cancer astrocytic tumor osteosarcoma pancreatic ductal adenocarcinoma chronic obstructive pulmonary disease large cell medulloblastoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia lung adenocarcinoma Pick disease cystic fibrosis lung carcinoma exocrine pancreatic carcinoma malignant mesothelioma fatty liver disease pulmonary hypertension MALT lymphoma skin basal cell carcinoma medulloblastoma adrenal cortex carcinoma subependymal giant cell astrocytoma anterior segment dysgenesis 6 hepatocellular carcinoma oligodendroglioma intellectual disability juvenile dermatomyositis pancreatic intraductal papillary-mucinous carcinoma congestive heart failure lung benign neoplasm pituitary cancer corneal disease primary congenital glaucoma facioscapulohumeral muscular dystrophy rheumatoid arthritis tuberculosis alopecia myopathy oral cavity neoplasm interstitial cystitis ovarian neoplasm childhood acute lymphoblastic leukemia pancreatic intraductal papillary-mucinous neoplasm colorectal carcinoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM				Cytochrome P450

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.