3PJV
Structure of Pseudomonas fluorescence LapD periplasmic domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth D] | SCOP2B Superfamily | Sensory domain-like | 8053816 | 3001802 | SCOP2B (2022-06-29) |
B [auth F] | SCOP2 Family | LapD output domain-like | 8045600 | 4004560 | SCOP2 (2022-06-29) |
B [auth F] | SCOP2 Superfamily | Sensory domain-like | 8053816 | 3001802 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | PF16448 | e3pjvD1 | A: a+b three layers | X: Profilin-like | H: LapD periplasmic domain (From Topology) | T: LapD periplasmic domain | F: PF16448 | ECOD (1.6) |
B [auth F] | PF16448 | e3pjvF1 | A: a+b three layers | X: Profilin-like | H: LapD periplasmic domain (From Topology) | T: LapD periplasmic domain | F: PF16448 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth D] | 3.30.110.200 | Alpha Beta | 2-Layer Sandwich | Translation Initiation Factor IF3 | CATH (4.3.0) | |
A [auth D] | 6.20.270.20 | Special | Other non-globular | Carboxypeptidase Inhibitor | Chain A | CATH (4.3.0) |
B [auth F] | 3.30.110.200 | Alpha Beta | 2-Layer Sandwich | Translation Initiation Factor IF3 | CATH (4.3.0) | |
B [auth F] | 6.20.270.20 | Special | Other non-globular | Carboxypeptidase Inhibitor | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth D], B [auth F] | PF16448 | LapD/MoxY periplasmic domain (LapD_MoxY_N) | LapD/MoxY periplasmic domain | This domain is the N-terminal periplasmic domain of the LapD and MoxY receptor proteins [1-2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth D], B [auth F] | Cyclic dimeric GMP binding protein |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth D], B [auth F] | IPR000160 | GGDEF domain | Domain |
A [auth D], B [auth F] | IPR003660 | HAMP domain | Domain |
A [auth D], B [auth F] | IPR032244 | LapD/MoxY, periplasmic domain | Domain |
A [auth D], B [auth F] | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily |
A [auth D], B [auth F] | IPR050706 | Cyclic di-GMP phosphodiesterase | Family |
A [auth D], B [auth F] | IPR042461 | LapD/MoxY periplasmic domain, C-terminal | Homologous Superfamily |
A [auth D], B [auth F] | IPR001633 | EAL domain | Domain |
A [auth D], B [auth F] | IPR035919 | EAL domain superfamily | Homologous Superfamily |
A [auth D], B [auth F] | IPR029787 | Nucleotide cyclase | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane protein containing HAMP domain |