3ON9

The SECRET domain from Ectromelia virus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	SECRET domain-like	8049162	4006383	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	VCCI-like	8092718	3001493	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	VCCI-like	8092718	3001493	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF1406	e3on9A1	A: beta sandwiches	X: Soluble secreted chemokine inhibitor, VCCI (From Topology)	H: Soluble secreted chemokine inhibitor, VCCI (From Topology)	T: Soluble secreted chemokine inhibitor, VCCI	F: DUF1406	ECOD (1.6)
B	DUF1406	e3on9B1	A: beta sandwiches	X: Soluble secreted chemokine inhibitor, VCCI (From Topology)	H: Soluble secreted chemokine inhibitor, VCCI (From Topology)	T: Soluble secreted chemokine inhibitor, VCCI	F: DUF1406	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.240.20	Mainly Beta	Sandwich	Viral Chemokine Inhibitor	Chain A	CATH (4.3.0)
B	2.60.240.20	Mainly Beta	Sandwich	Viral Chemokine Inhibitor	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF07190	Tumour necrosis factor receptor, SECRET domain (CrmD_SECRET)	Tumour necrosis factor receptor, SECRET domain	This domain, named as the SECRET domain, is found at the C-terminal end of Tumour necrosis factor receptor (CrmD) from the orthopoxvirus Ectromelia virus. This domain binds a subset of human and mouse CC, CXC and C chemokines. It is thought to be res ...	This domain, named as the SECRET domain, is found at the C-terminal end of Tumour necrosis factor receptor (CrmD) from the orthopoxvirus Ectromelia virus. This domain binds a subset of human and mouse CC, CXC and C chemokines. It is thought to be responsible for the anti-chemokine activity of CrmD. The SECRET domain monomer adopts a beta-sandwich fold, consisting of two parallel beta-sheets with five and six anti-parallel strands, and the connecting loops [1]. This domain is also found in other uncharacterised sequences from poxvirus, including Protein OPG192 and Protein C8 from Vaccinia virus.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Tumour necrosis factor receptor	molecular transducer activity transmembrane signaling receptor activity signaling receptor activity tumor necrosis factor receptor activity death receptor activity protein binding binding cytokine binding tumor necrosis factor binding	multicellular organismal process system process regulation of cellular process regulation of developmental process regulation of myelination regulation of system process positive regulation of biological process regulation of nervous system development multicellular organism development positive regulation of myelination axon ensheathment ensheathment of neurons positive regulation of nervous system process anatomical structure development multicellular organismal process system process regulation of cellular process regulation of developmental process regulation of myelination regulation of system process positive regulation of biological process regulation of nervous system development multicellular organism development positive regulation of myelination axon ensheathment ensheathment of neurons positive regulation of nervous system process anatomical structure development regulation of multicellular organismal process positive regulation of cellular process system development developmental process regulation of biological process regulation of multicellular organismal development nervous system process biological regulation nervous system development regulation of nervous system process myelination positive regulation of multicellular organismal process cellular process cellular response to stimulus response to stimulus signaling cell death intracellular signal transduction cell communication apoptotic signaling pathway cellular response to stress DNA damage response response to stress intrinsic apoptotic signaling pathway in response to DNA damage signal transduction apoptotic process intrinsic apoptotic signaling pathway programmed cell death regulation of leukocyte activation regulation of cell activation lymphocyte activation leukocyte proliferation leukocyte activation T cell activation lymphocyte proliferation regulation of immune system process T cell proliferation regulation of lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation cell activation regulation of T cell activation regulation of T cell proliferation regulation of cell population proliferation mononuclear cell proliferation immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation symbiont-mediated perturbation of host defense response response to host defenses biological process involved in interspecies interaction between organisms response to other organism response to defenses of other organism modulation by virus of host process response to external stimulus virus-mediated perturbation of host defense response biological process involved in interaction with host response to biotic stimulus biological process involved in symbiotic interaction symbiont-mediated perturbation of host process viral process response to host response to external biotic stimulus modulation of process of another organism modulation by virus of host cellular process adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity regulation of immune effector process T cell mediated immunity cellular biosynthetic process T cell cytokine production regulation of T cell cytokine production regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains cytokine production regulation of cytokine production leukocyte mediated immunity cytokine production involved in immune response regulation of T cell mediated immunity production of molecular mediator of immune response regulation of biosynthetic process regulation of cytokine production involved in immune response immune response regulation of adaptive immune response cellular metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process adaptive immune response immune effector process regulation of cellular biosynthetic process regulation of gene expression regulation of leukocyte mediated immunity biosynthetic process regulation of lymphocyte mediated immunity regulation of response to stimulus regulation of immune response metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of production of molecular mediator of immune response regulation of metabolic process regulation of defense response regulation of response to external stimulus negative regulation of inflammatory response defense response negative regulation of response to stimulus negative regulation of biological process regulation of inflammatory response negative regulation of response to external stimulus regulation of response to stress regulation of neuroinflammatory response negative regulation of defense response inflammatory response negative regulation of neuroinflammatory response neuroinflammatory response positive regulation of nervous system development cellular developmental process cell development regulation of cell differentiation regulation of neurogenesis regulation of gliogenesis positive regulation of gliogenesis regulation of cell development positive regulation of developmental process neurogenesis gliogenesis positive regulation of cell differentiation cell differentiation positive regulation of neurogenesis positive regulation of oligodendrocyte differentiation regulation of glial cell differentiation positive regulation of cell development positive regulation of glial cell differentiation central nervous system development oligodendrocyte differentiation glial cell differentiation regulation of oligodendrocyte differentiation cell surface receptor signaling pathway extrinsic apoptotic signaling pathway catabolic process positive regulation of protein metabolic process positive regulation of membrane protein ectodomain proteolysis positive regulation of cellular metabolic process macromolecule catabolic process regulation of primary metabolic process cellular catabolic process positive regulation of metabolic process regulation of proteolysis proteolysis membrane protein proteolysis positive regulation of macromolecule metabolic process protein metabolic process membrane protein ectodomain proteolysis regulation of membrane protein ectodomain proteolysis regulation of protein metabolic process primary metabolic process regulation of catabolic process protein catabolic process positive regulation of protein catabolic process positive regulation of catabolic process positive regulation of proteolysis regulation of cellular catabolic process positive regulation of cellular catabolic process regulation of protein catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR051670	TNF and chemokine receptor-like	Family
A, B	IPR034059	Tumor necrosis factor receptor, N-terminal, viral	Domain
A, B	IPR011172	Poxvirus, TNF-alpha receptor-II	Family
A, B	IPR010806	Poxvirus, TNF receptor-II, C-terminal	Domain
A, B	IPR001368	TNFR/NGFR cysteine-rich region	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.