3OB9
Structure of the human MSL3 chromo-barrel domain at 2.5 Angstrom resolution
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3ob9a_ | All beta proteins | SH3-like barrel | Chromo domain-like | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d3ob9b_ | All beta proteins | SH3-like barrel | Chromo domain-like | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d3ob9c_ | All beta proteins | SH3-like barrel | Chromo domain-like | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d3ob9d1 | All beta proteins | SH3-like barrel | Chromo domain-like | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d3ob9d2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E | d3ob9e_ | All beta proteins | SH3-like barrel | Chromo domain-like | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Chromo domain-like | 8089216 | 3000161 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Chromo domain-like | 8089216 | 3000161 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Chromo domain-like | 8089216 | 3000161 | SCOP2B (2022-06-29) |
D | SCOP2 Family | Chromo barrel domain | 8089215 | 4003139 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | Chromo domain-like | 8089216 | 3000161 | SCOP2 (2022-06-29) |
E | SCOP2B Superfamily | Chromo domain-like | 8089216 | 3000161 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Tudor-knot_1 | e3ob9A1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Tudor-knot_1 | ECOD (1.6) |
B | Tudor-knot_1 | e3ob9B1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Tudor-knot_1 | ECOD (1.6) |
C | Tudor-knot_1 | e3ob9C1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Tudor-knot_1 | ECOD (1.6) |
D | Tudor-knot_1 | e3ob9D1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Tudor-knot_1 | ECOD (1.6) |
E | Tudor-knot_1 | e3ob9E1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Tudor-knot_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
C | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
D | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
E | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11717 | RNA binding activity-knot of a chromodomain (Tudor-knot) | RNA binding activity-knot of a chromodomain | - | Family | |
PF22732 | MSL3 chromodomain-like (MSL3_chromo-like) | MSL3 chromodomain-like | This domain is found in Male-specific lethal-3 (MSL3) and other related proteins such as MRG15 transcription factor. MSL3 resides in the MSL (male-specific lethal) complex, which upregulates transcription by spreading the histone H4 Lys16 acetyl mark ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000953 | Chromo/chromo shadow domain | Domain | |
IPR016197 | Chromo-like domain superfamily | Homologous Superfamily | |
IPR025995 | RNA binding activity-knot of a chromodomain | Domain | |
IPR008676 | MRG | Family | |
IPR026541 | MRG domain | Domain | |
IPR038217 | MRG, C-terminal domain superfamily | Homologous Superfamily |