3NQY
Crystal structure of the autoprocessed complex of Vibriolysin MCP-02 with a single point mutation E346A
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d3nqyb_ | Alpha and beta proteins (a+b) | Zincin-like | Metalloproteases ('zincins'), catalytic domain | Thermolysin-like | automated matches | (Pseudoalteromonas sp. SM9913 ) [TaxId: 234831 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8092134 | 3001975 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | FTP/YycH/YycI-like | 8092132 | 3002371 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF01447,PF02868 | e3nqyB1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: PF01447,PF02868 | ECOD (1.6) |
B [auth A] | PF03413 | e3nqyA2 | A: a+b two layers | X: Cystatin-like | H: Cystatin/monellin (From Topology) | T: Cystatin/monellin | F: PF03413 | ECOD (1.6) |
B [auth A] | PF07504 | e3nqyA1 | A: a+b two layers | X: Cystatin-like | H: Cystatin/monellin (From Topology) | T: Cystatin/monellin | F: PF07504 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.10.170.10 | Alpha Beta | Roll | Elastase | domain 1 | CATH (4.3.0) |
A [auth B] | 1.10.390.10 | Mainly Alpha | Orthogonal Bundle | Neutral Protease | domain 2 | CATH (4.3.0) |
B [auth A] | 3.10.450.490 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
B [auth A] | 3.10.450.40 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF01447 | Thermolysin metallopeptidase, catalytic domain (Peptidase_M4) | Thermolysin metallopeptidase, catalytic domain | - | Domain |
A [auth B] | PF02868 | Thermolysin metallopeptidase, alpha-helical domain (Peptidase_M4_C) | Thermolysin metallopeptidase, alpha-helical domain | - | Domain |
B [auth A] | PF07504 | Fungalysin/Thermolysin Propeptide Motif (FTP) | Fungalysin/Thermolysin Propeptide Motif | - | Motif |
B [auth A] | PF03413 | Peptidase propeptide and YPEB domain (PepSY) | Peptidase propeptide and YPEB domain | This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B] | Secreted metalloprotease Mcp02 | - | ||
B [auth A] | Secreted metalloprotease Mcp02 | - |