3NM9
HMGD(M13A)-DNA complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3nm9a_ | All alpha proteins | HMG-box | HMG-box | HMG-box | automated matches | Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
B [auth D] | d3nm9d_ | All alpha proteins | HMG-box | HMG-box | HMG-box | automated matches | Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
C [auth G] | d3nm9g_ | All alpha proteins | HMG-box | HMG-box | HMG-box | automated matches | Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
D [auth J] | d3nm9j_ | All alpha proteins | HMG-box | HMG-box | HMG-box | automated matches | Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
E [auth M] | d3nm9m_ | All alpha proteins | HMG-box | HMG-box | HMG-box | automated matches | Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
F [auth P] | d3nm9p_ | All alpha proteins | HMG-box | HMG-box | HMG-box | automated matches | Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | HMG-box | 8036769 | 3001368 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | HMG-box | 8036769 | 3001368 | SCOP2B (2022-06-29) |
C [auth G] | SCOP2B Superfamily | HMG-box | 8036769 | 3001368 | SCOP2B (2022-06-29) |
D [auth J] | SCOP2B Superfamily | HMG-box | 8036769 | 3001368 | SCOP2B (2022-06-29) |
E [auth M] | SCOP2B Superfamily | HMG-box | 8036769 | 3001368 | SCOP2B (2022-06-29) |
F [auth P] | SCOP2B Superfamily | HMG-box | 8036769 | 3001368 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HMG_box | e3nm9A1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: HMG_box | ECOD (1.6) |
B [auth D] | HMG_box | e3nm9D1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: HMG_box | ECOD (1.6) |
C [auth G] | HMG_box | e3nm9G1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: HMG_box | ECOD (1.6) |
D [auth J] | HMG_box | e3nm9J1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: HMG_box | ECOD (1.6) |
E [auth M] | HMG_box | e3nm9M1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: HMG_box | ECOD (1.6) |
F [auth P] | HMG_box | e3nm9P1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: HMG_box | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.30.10 | Mainly Alpha | Orthogonal Bundle | DNA Binding (I), subunit A | High mobility group box domain | CATH (4.3.0) |
B [auth D] | 1.10.30.10 | Mainly Alpha | Orthogonal Bundle | DNA Binding (I), subunit A | High mobility group box domain | CATH (4.3.0) |
C [auth G] | 1.10.30.10 | Mainly Alpha | Orthogonal Bundle | DNA Binding (I), subunit A | High mobility group box domain | CATH (4.3.0) |
D [auth J] | 1.10.30.10 | Mainly Alpha | Orthogonal Bundle | DNA Binding (I), subunit A | High mobility group box domain | CATH (4.3.0) |
E [auth M] | 1.10.30.10 | Mainly Alpha | Orthogonal Bundle | DNA Binding (I), subunit A | High mobility group box domain | CATH (4.3.0) |
F [auth P] | 1.10.30.10 | Mainly Alpha | Orthogonal Bundle | DNA Binding (I), subunit A | High mobility group box domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00505 | HMG (high mobility group) box (HMG_box) | HMG (high mobility group) box | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050342 | High Mobility Group Box (HMGB) | Family | |
IPR009071 | High mobility group box domain | Domain | |
IPR036910 | High mobility group box domain superfamily | Homologous Superfamily |