3NCY
X-ray crystal structure of an arginine agmatine antiporter (AdiC) in complex with a Fab fragment
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Arginine/agmatine antiporter-like | 8048865 | 4006243 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | SNF-like | 8092927 | 3001654 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | SNF-like | 8092927 | 3001654 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | SNF-like | 8092927 | 3001654 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | SNF-like | 8092927 | 3001654 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | AA_permease_2_1 | e3ncyA1 | A: alpha complex topology | X: Sodium:neurotransmitter symporter family (SNF)-like (From Topology) | H: Sodium:neurotransmitter symporter family (SNF)-like (From Topology) | T: Sodium:neurotransmitter symporter family (SNF)-like | F: AA_permease_2_1 | ECOD (1.6) |
B | AA_permease_2_1 | e3ncyB1 | A: alpha complex topology | X: Sodium:neurotransmitter symporter family (SNF)-like (From Topology) | H: Sodium:neurotransmitter symporter family (SNF)-like (From Topology) | T: Sodium:neurotransmitter symporter family (SNF)-like | F: AA_permease_2_1 | ECOD (1.6) |
C | AA_permease_2_1 | e3ncyC1 | A: alpha complex topology | X: Sodium:neurotransmitter symporter family (SNF)-like (From Topology) | H: Sodium:neurotransmitter symporter family (SNF)-like (From Topology) | T: Sodium:neurotransmitter symporter family (SNF)-like | F: AA_permease_2_1 | ECOD (1.6) |
D | AA_permease_2_1 | e3ncyD1 | A: alpha complex topology | X: Sodium:neurotransmitter symporter family (SNF)-like (From Topology) | H: Sodium:neurotransmitter symporter family (SNF)-like (From Topology) | T: Sodium:neurotransmitter symporter family (SNF)-like | F: AA_permease_2_1 | ECOD (1.6) |
E [auth Q] | V-set_8 | e3ncyQ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
E [auth Q] | C1-set_1 | e3ncyQ2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
F [auth P] | V-set_8 | e3ncyP1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
F [auth P] | C1-set_1 | e3ncyP2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
G [auth W] | C1-set_4 | e3ncyW2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
G [auth W] | V-set | e3ncyW1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
H [auth S] | C1-set_4 | e3ncyS2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
H [auth S] | V-set | e3ncyS1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth Q] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
F [auth P] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
G [auth W] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
H [auth S] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
E [auth Q], F [auth P] | Antibody Fab Fragment | VH-CH1 | Mus musculus (house mouse) | IGHV1S12*01, IGHV1S56*01, IGHV1-75*01, IGHJ4*01, IGHG2A*01, IGHG2A*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-2A_KAPPA | IMGT (202432-0) |
G [auth W], H [auth S] | Antibody Fab Fragment | L-KAPPA | Mus musculus (house mouse) | IGKV4-59*01, IGKJ1*01, IGKJ2*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-2A_KAPPA | IMGT (202432-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
E [auth Q], F [auth P] | Heavy Chain | IGHV1 | - | adic | adic | SAbDab (2024-08-16) |
G [auth W], H [auth S] | Light Chain | IGKV4 | Kappa | adic | adic | SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
AdiC | ||||
E [auth Q], F [auth P] | Fab Heavy chain | - | - | - |
G [auth W], H [auth S] | Fab Light chain | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Amino Acid/Polyamine/Organocation (APC) Superfamily | AdiC Arginine:Agmatine Antiporter (with Fab fragment) |