Annotations: 3NBX

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	PRK13531_2nd	e3nbxX4	A: beta barrels	X: LARA domain (From Topology)	H: LARA domain (From Topology)	T: LARA domain	F: PRK13531_2nd	ECOD (1.6)
A [auth X]	PRK13531_1st	e3nbxX2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PRK13531_1st	ECOD (1.6)
A [auth X]	DUF3763	e3nbxX3	A: alpha bundles	X: Spectrin repeat-like	H: Triple-helical domain in regulatory ATPase variant A (RavA) (From Topology)	T: Triple-helical domain in regulatory ATPase variant A (RavA)	F: DUF3763	ECOD (1.6)
A [auth X]	Sigma54_activat	e3nbxX1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A [auth X]	1.20.58.1510	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
A [auth X]	2.40.128.430	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF20265	ATPase, RavA, LARA domain (LARA_dom)	ATPase, RavA, LARA domain	This is the LARA (LdcI Associating domain of RavA) domain of bacterial regulatory ATPase RavA (Regulatory ATPase variant A) [1,2]. It adopts an unique fold which consists of a compact antiparallel beta-barrel- like structure formed by six beta-strand ...	This is the LARA (LdcI Associating domain of RavA) domain of bacterial regulatory ATPase RavA (Regulatory ATPase variant A) [1,2]. It adopts an unique fold which consists of a compact antiparallel beta-barrel- like structure formed by six beta-strands and one alpha-helix [1,2]. This domain mediates the interaction between RavA and LdcI (inducible lysine decarboxylase) which form a cage-like complex proposed to assist assembly of specific respiratory complexes in E. coli [2].	Domain
A [auth X]	PF07728	AAA domain (dynein-related subfamily) (AAA_5)	AAA domain (dynein-related subfamily)	This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model.	Domain
A [auth X]	PF12592	ATPase, RavA, C-terminal (ATPase_RavA_C)	ATPase, RavA, C-terminal	This domain is found at the C-terminal of bacterial regulatory ATPase RavA (Regulatory ATPase variant A) [1,2] and is the second subdomain that forms the discontinuous triple helical domain [1]. RavA forms an hexamer in which the triple helical domai ...	This domain is found at the C-terminal of bacterial regulatory ATPase RavA (Regulatory ATPase variant A) [1,2] and is the second subdomain that forms the discontinuous triple helical domain [1]. RavA forms an hexamer in which the triple helical domain mediates the lateral interactions between neighbouring RavA monomers [2].	Domain
A [auth X]	PF17868	AAA lid domain (AAA_lid_8)	AAA lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	ATPase ravA	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity identical protein binding protein binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR045427	MoxR domain	Domain
A [auth X]	IPR050513	RavA family ATPases	Family
A [auth X]	IPR046898	ATPase RavA, LARA domain	Domain
A [auth X]	IPR046932	ATPase RavA, LARA domain superfamily	Homologous Superfamily
A [auth X]	IPR023671	ATPase RavA	Family
A [auth X]	IPR003593	AAA+ ATPase domain	Domain
A [auth X]	IPR022547	ATPase, RavA, C-terminal	Domain
A [auth X]	IPR041538	ATPase RavA-like, AAA lid domain	Domain
A [auth X]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.