Annotations: 3N0R

Structure of the PhyR stress response regulator at 1.25 Angstrom resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SRP54	e3n0rA4	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: SRP54	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.140.160	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A	domain 3	CATH (4.3.0)
A	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF22233	Response regulator PhyR, sigma-like domain (PhyR_sigma-like)	Response regulator PhyR, sigma-like domain	PhyR is a signal transduction response regulator found in Alphaproteobacteria with a C-terminal receiver domain (Pfam:PF00072) and extracytoplasmic function (ECF) sigma factor-like domain at the N-terminal which is represented in this entry [1-3]. Ph ...	PhyR is a signal transduction response regulator found in Alphaproteobacteria with a C-terminal receiver domain (Pfam:PF00072) and extracytoplasmic function (ECF) sigma factor-like domain at the N-terminal which is represented in this entry [1-3]. PhyR is the regulator of the two-component signal transduction system which controls transcription in response to general stress.	Domain
A	PF00072	Response regulator receiver domain (Response_reg)	Response regulator receiver domain	This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	Domain
A	PF22029	Sigma2 domain of PhyR (PhyR_sigma2)	Sigma2 domain of PhyR	This is the N-terminal domain of response regulator PhyR and related proteins. It consists of three alpha-helices and together with sigma4 constitutes the PhyR sigma-like (SL) domain. This domain was shown to bind to anti-sigma factor NepR [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Response regulator	-	cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR014605	Signal transduction response regulator PhyR-like, alphaproteobacteria	Family
A	IPR011006	CheY-like superfamily	Homologous Superfamily
A	IPR001789	Signal transduction response regulator, receiver domain	Domain
A	IPR050595	Bacterial response regulator	Family
A	IPR053867	PhyR, sigma4 domain	Domain
A	IPR013324	RNA polymerase sigma factor, region 3/4-like	Homologous Superfamily
A	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A	IPR053866	PhyR, sigma2 domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.