3M8A

Crystal Structure of Swine Flu Virus NS1 N-Terminal RNA Binding Domain from H1N1 Influenza A/California/07/2009

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3m8aa_	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
B	d3m8ab_	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
C	d3m8ac1	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
C	d3m8ac2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
D	d3m8ad_	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
E	d3m8ae_	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
F	d3m8af_	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
G	d3m8ag1	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
G	d3m8ag2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
H	d3m8ah_	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
I	d3m8ai_	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
J	d3m8aj1	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
J	d3m8aj2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
K	d3m8ak_	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
L	d3m8al1	All alpha proteins	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	N-terminal, RNA-binding domain of nonstructural protein NS1	automated matches	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)
L	d3m8al2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Influenza A virus (A/California/07/2009(H1N1)) ) [TaxId: 641809 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2B (2022-06-29)
C	SCOP2 Family	N-terminal, RNA-binding domain of nonstructural protein NS1	8071729	4000764	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8071730	3001284	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Flu_NS1_N	e3m8aA1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)
B	Flu_NS1_N	e3m8aB1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)
C	Flu_NS1_N	e3m8aC1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)
D	Flu_NS1_N	e3m8aD1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)
E	Flu_NS1_N	e3m8aE1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)
F	Flu_NS1_N	e3m8aF1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)
G	Flu_NS1_N	e3m8aG1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)
H	Flu_NS1_N	e3m8aH1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)
I	Flu_NS1_N	e3m8aI1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)
J	Flu_NS1_N	e3m8aJ1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)
K	Flu_NS1_N	e3m8aK1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)
L	Flu_NS1_N	e3m8aL1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Flu_NS1_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
B	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
C	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
D	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
E	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
F	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
G	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
H	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
I	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
J	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
K	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)
L	1.10.287.10	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	S15/NS1, RNA-binding	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00600	Influenza non-structural protein (NS1) (Flu_NS1)	Influenza non-structural protein (NS1)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Nonstructural protein 1	enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity RNA binding binding organic cyclic compound binding nucleic acid binding	symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host mRNA processing symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression cellular process modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host defense response response to host defenses response to stimulus response to other organism symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host mRNA processing symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression cellular process modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host defense response response to host defenses response to stimulus response to other organism response to defenses of other organism modulation by virus of host process response to external stimulus virus-mediated perturbation of host defense response response to biotic stimulus viral process response to host response to external biotic stimulus modulation by virus of host cellular process symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of RIG-I activity symbiont-mediated suppression of host pathogen-associated molecular pattern receptor signaling pathway symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response response to host immune response symbiont-mediated suppression of host defenses symbiont-mediated perturbation of host innate immune response symbiont-mediated perturbation of host signal transduction pathway symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host defenses symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway symbiont-mediated suppression of host PKR/eIFalpha signaling symbiont-mediated perturbation of host translation symbiont-mediated suppression of host-directed shutoff of host translation symbiont-mediated suppression of host type I interferon-mediated signaling pathway symbiont-mediated suppression of host interferon-mediated signaling pathway	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR038064	Influenza A virus NS1, effector domain-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000256	Influenza A virus NS1 protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004208	Influenza non-structural protein (NS1)	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.