Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRetrovirus capsid dimerization domain-like 8037182 3001819 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRetrovirus capsid dimerization domain-like 8037182 3001819 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGag_p24_Ce3lryA1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein-C (From Topology)T: Retrovirus capsid protein-CF: Gag_p24_CECOD (1.6)
BGag_p24_Ce3lryB1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein-C (From Topology)T: Retrovirus capsid protein-CF: Gag_p24_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein Chain ACATH (4.3.0)
B1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein Chain ACATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
HIV-1 capsid protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR036397Ribonuclease H superfamilyHomologous Superfamily
A, B
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A, B
IPR001995Peptidase A2A, retrovirus, catalyticDomain
A, B
IPR001878Zinc finger, CCHC-typeDomain
A, B
IPR008919Retrovirus capsid, N-terminalHomologous Superfamily
A, B
IPR012344Matrix protein, lentiviral and alpha-retroviral, N-terminalHomologous Superfamily
A, B
IPR036862Integrase, C-terminal domain superfamily, retroviralHomologous Superfamily
A, B
IPR018061RetropepsinsDomain
A, B
IPR010661Reverse transcriptase thumbDomain
A, B
IPR002156Ribonuclease H domainDomain
A, B
IPR036875Zinc finger, CCHC-type superfamilyHomologous Superfamily
A, B
IPR003308Integrase, N-terminal zinc-binding domainDomain
A, B
IPR001584Integrase, catalytic coreDomain
A, B
IPR045345Retroviral nucleocapsid Gag protein p24, C-terminal domainDomain
A, B
IPR010999Retroviral matrix proteinHomologous Superfamily
A, B
IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily
A, B
IPR001969Aspartic peptidase, active siteActive Site
A, B
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
A, B
IPR017856Integrase-like, N-terminalHomologous Superfamily
A, B
IPR000071Immunodeficiency lentiviral matrix, N-terminalDomain
A, B
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A, B
IPR001037Integrase, C-terminal, retroviralDomain
A, B
IPR034170Retropepsin-like catalytic domainDomain
A, B
IPR000477Reverse transcriptase domainDomain
A, B
IPR010659Reverse transcriptase connectionDomain
A, B
IPR008916Retrovirus capsid, C-terminalHomologous Superfamily