3LMM
Crystal Structure of the DIP2311 protein from Corynebacterium diphtheriae, Northeast Structural Genomics Consortium Target CdR35
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | DIP2311 C-terminal domain-like | 8091023 | 4007718 | SCOP2 (2021-05-27) |
A | SCOP2 Family | DIP2311 ATPase-like domain-like | 8049158 | 4006381 | SCOP2 (2021-05-27) |
A | SCOP2 Family | NE2525/DIP2311 N-terminal domain-like | 8045740 | 4004653 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Winged helix DNA-binding domain | 8091024 | 3000034 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | GHKL (Gyrase Hsp90 Histidine Kinase MutL) domain-like | 8091022 | 3000091 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | AlbA-like | 8091021 | 3000507 | SCOP2 (2021-05-27) |
B | SCOP2B Superfamily | GHKL (Gyrase Hsp90 Histidine Kinase MutL) domain-like | 8091022 | 3000091 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | AlbA-like | 8091021 | 3000507 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8091024 | 3000034 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Winged helix DNA-binding domain | 8091024 | 3000034 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | AlbA-like | 8091021 | 3000507 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | GHKL (Gyrase Hsp90 Histidine Kinase MutL) domain-like | 8091022 | 3000091 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Winged helix DNA-binding domain | 8091024 | 3000034 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | AlbA-like | 8091021 | 3000507 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | GHKL (Gyrase Hsp90 Histidine Kinase MutL) domain-like | 8091022 | 3000091 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF18685 | e3lmmA5 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF18685 | ECOD (1.6) |
A | PF13749 | e3lmmA4 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: Uncharacterized protein DIP2311 middle domain (From Topology) | T: Uncharacterized protein DIP2311 middle domain | F: PF13749 | ECOD (1.6) |
A | PF04326 | e3lmmA3 | A: a+b two layers | X: IF3-like | H: Schlafen 8 (From Topology) | T: Schlafen 8 | F: PF04326 | ECOD (1.6) |
B | PF18685 | e3lmmB3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF18685 | ECOD (1.6) |
B | PF22168 | e3lmmB4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22168 | ECOD (1.6) |
B | PF13749 | e3lmmB1 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: Uncharacterized protein DIP2311 middle domain (From Topology) | T: Uncharacterized protein DIP2311 middle domain | F: PF13749 | ECOD (1.6) |
B | PF04326 | e3lmmB2 | A: a+b two layers | X: IF3-like | H: Schlafen 8 (From Topology) | T: Schlafen 8 | F: PF04326 | ECOD (1.6) |
C | PF18685 | e3lmmC6 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF18685 | ECOD (1.6) |
C | PF13749 | e3lmmC4 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: Uncharacterized protein DIP2311 middle domain (From Topology) | T: Uncharacterized protein DIP2311 middle domain | F: PF13749 | ECOD (1.6) |
C | PF04326 | e3lmmC5 | A: a+b two layers | X: IF3-like | H: Schlafen 8 (From Topology) | T: Schlafen 8 | F: PF04326 | ECOD (1.6) |
D | PF18685 | e3lmmD3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF18685 | ECOD (1.6) |
D | PF22168 | e3lmmD4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22168 | ECOD (1.6) |
D | PF13749 | e3lmmD2 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: Uncharacterized protein DIP2311 middle domain (From Topology) | T: Uncharacterized protein DIP2311 middle domain | F: PF13749 | ECOD (1.6) |
D | PF04326 | e3lmmD1 | A: a+b two layers | X: IF3-like | H: Schlafen 8 (From Topology) | T: Schlafen 8 | F: PF04326 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22168 | Transcriptional regulator DIP2311-like, C-terminal domain (DIP2311-like_C) | Transcriptional regulator DIP2311-like, C-terminal domain | This domain is found at the C-terminal end of Transcriptional regulator DIP2311 from Corynebacterium diphtheriae (Swiss:Q6NEG3) and similar bacterial sequences. This domain, which shows a winged helix fold, is normally found associated to Pfam:PF0432 ... | Domain | |
PF18685 | Family of unknown function (DUF5635) (DUF5635) | Family of unknown function (DUF5635) | This is a domain of unknown function which is found at the C-terminal region of Pfam:PF13749 in actinobacteria. | Domain | |
PF13749 | Putative ATP-dependent DNA helicase recG C-terminal (HATPase_c_4) | Putative ATP-dependent DNA helicase recG C-terminal | This domain may well interact selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | Domain | |
PF04326 | Schlafen, AlbA_2 (SLFN_AlbA_2) | Schlafen, AlbA_2 | This is the AlbA_2 domain from the Schlafen (SLFN) family of proteins which are important in cell differentiation and defense against viruses [1,2]. This domain is present at the N-terminal of all SLFN proteins and includes the SLFN box, a sequence u ... | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR025831 | ATP-dependent DNA helicase RecG, C-terminal domain | Domain | |
IPR040728 | Domain of unknown function DUF5635 | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR007421 | Schlafen, AlbA_2 domain | Domain | |
IPR038475 | RecG, C-terminal domain superfamily | Homologous Superfamily | |
IPR038461 | Schlafen, AlbA_2 domain superfamily | Homologous Superfamily |