3LML

Crystal Structure of the sheath tail protein Lin1278 from Listeria innocua, Northeast Structural Genomics Consortium Target LkR115

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Phage_sheath_1N	e3lmlA11	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
A	Phage_sheath_1C	e3lmlA10	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
A	Phage_sheath_1	e3lmlA12	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
B	Phage_sheath_1N	e3lmlB11	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
B	Phage_sheath_1C	e3lmlB10	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
B	Phage_sheath_1	e3lmlB12	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
C	Phage_sheath_1N	e3lmlC11	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
C	Phage_sheath_1C	e3lmlC10	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
C	Phage_sheath_1	e3lmlC12	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
D	Phage_sheath_1N	e3lmlD3	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
D	Phage_sheath_1C	e3lmlD1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
D	Phage_sheath_1	e3lmlD2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
E	Phage_sheath_1N	e3lmlE3	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
E	Phage_sheath_1C	e3lmlE1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
E	Phage_sheath_1	e3lmlE2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
F	Phage_sheath_1N	e3lmlF5	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
F	Phage_sheath_1C	e3lmlF4	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
F	Phage_sheath_1	e3lmlF6	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
A	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
A	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
B	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
B	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
C	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
C	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
C	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
D	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
D	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
D	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
E	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
E	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
E	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
F	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
F	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
F	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
A, B, C, D, E A, B, C, D, E, F	PF17481	Phage tail sheath protein beta-sandwich domain (Phage_sheath_domII)	Phage tail sheath protein beta-sandwich domain	This entry represents a two-layer beta sandwich domain found in a variety of phage tail sheath proteins, referred to as domain II in [4,5]. Domain I and II form the protease-resistant fragment [5].	Domain
A, B, C, D, E A, B, C, D, E, F	PF22671	Tail sheath protein Gp18 domain III N-terminal region (Gp18_domIII_N)	Tail sheath protein Gp18 domain III N-terminal region	This entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti ...	This entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti-parallel beta-strands plus six alpha-helices, which surround the beta-sheet.	Domain
A, B, C, D, E A, B, C, D, E, F	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR020287	Tail sheath protein, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR035326	Phage tail sheath protein-like, beta-sandwich domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.