3L2O
Structure-Based Mechanism of Dimerization-Dependent Ubiquitination by the SCFFbx4 Ubiquitin Ligase
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3l2oa1 | Alpha and beta proteins (a+b) | POZ domain | POZ domain | BTB/POZ domain | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Skp1_POZ | e3l2oA1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ | ECOD (1.6) |
B | F-box-like_1 | e3l2oB2 | A: alpha arrays | X: F-box domain (From Topology) | H: F-box domain (From Topology) | T: F-box domain | F: F-box-like_1 | ECOD (1.6) |
B | UNK_F_TYPE | e3l2oB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.710.10 | Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1 | Chain A | CATH (4.3.0) |
B | 1.20.1280.50 | Mainly Alpha | Up-down Bundle | Monooxygenase | CATH (4.3.0) | |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain | |
PF01466 | Skp1 family, dimerisation domain (Skp1) | Skp1 family, dimerisation domain | - | Domain | |
PF00646 | F-box domain (F-box) | F-box domain | This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; Pfam:PF00560 and Pfam:PF07 ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016073 | SKP1 component, POZ domain | Domain | |
IPR001232 | S-phase kinase-associated protein 1-like | Family | |
IPR036296 | SKP1-like, dimerisation domain superfamily | Homologous Superfamily | |
IPR016072 | SKP1 component, dimerisation | Domain | |
IPR011333 | SKP1/BTB/POZ domain superfamily | Homologous Superfamily | |
IPR016897 | S-phase kinase-associated protein 1 | Family | |
IPR001810 | F-box domain | Domain | |
IPR039588 | F-box only protein 4 | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR036047 | F-box-like domain superfamily | Homologous Superfamily |