3KNT
Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanine
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HhH-GPD_1 | e3kntA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: DNA-glycosylase | F: HhH-GPD_1 | ECOD (1.6) |
B | HhH-GPD_1 | e3kntB1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: DNA-glycosylase | F: HhH-GPD_1 | ECOD (1.6) |
C | HhH-GPD_1 | e3kntC1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: DNA-glycosylase | F: HhH-GPD_1 | ECOD (1.6) |
D | HhH-GPD_1 | e3kntD1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: DNA-glycosylase | F: HhH-GPD_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.1670.10 | Mainly Alpha | Orthogonal Bundle | Endonuclease Iii, domain 2 | Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | CATH (4.3.0) |
A | 1.10.340.30 | Mainly Alpha | Orthogonal Bundle | Endonuclease III | domain 1 | CATH (4.3.0) |
B | 1.10.1670.10 | Mainly Alpha | Orthogonal Bundle | Endonuclease Iii, domain 2 | Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | CATH (4.3.0) |
B | 1.10.340.30 | Mainly Alpha | Orthogonal Bundle | Endonuclease III | domain 1 | CATH (4.3.0) |
C | 1.10.1670.10 | Mainly Alpha | Orthogonal Bundle | Endonuclease Iii, domain 2 | Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | CATH (4.3.0) |
C | 1.10.340.30 | Mainly Alpha | Orthogonal Bundle | Endonuclease III | domain 1 | CATH (4.3.0) |
D | 1.10.1670.10 | Mainly Alpha | Orthogonal Bundle | Endonuclease Iii, domain 2 | Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | CATH (4.3.0) |
D | 1.10.340.30 | Mainly Alpha | Orthogonal Bundle | Endonuclease III | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22175 | 8-oxoguanine DNA glycosylase (Ogg-HhH) | 8-oxoguanine DNA glycosylase | This entry represents 8-oxoguanine DNA glycosylases (Ogg) that are responsible for the recognition and excision of one of the most common DNA oxidative product, 7,8-dihydro-8-oxoguanine (8-oxoG). These enzymes share a common all-alpha architecture bu ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
N-glycosylase/DNA lyase |
|
| - | |
5'-D(*AP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3' | - | - | - | |
5'-D(*TP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3' | - | - | - |