3K3N
Crystal structure of the catalytic core domain of human PHF8
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3k3na_ | All beta proteins | Double-stranded beta-helix | Clavaminate synthase-like | Jumonji domain / Histone demethylase core | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | JmjC_1 | e3k3nA1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: JmjC_1 | ECOD (1.6) |
A | KOG1633 | e3k3nA2 | A: alpha bundles | X: C-terminal helical domain in Jumonji domain-containing histone demethylases (From Topology) | H: C-terminal helical domain in Jumonji domain-containing histone demethylases (From Topology) | T: C-terminal helical domain in Jumonji domain-containing histone demethylases | F: KOG1633 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.650 | Mainly Beta | Sandwich | Jelly Rolls | Cupin | CATH (4.3.0) |
A | 1.20.58.1360 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02373 | JmjC domain, hydroxylase (JmjC) | JmjC domain, hydroxylase | The JmjC domain belongs to the Cupin superfamily [3]. JmjC-domain proteins may be protein hydroxylases that catalyse a novel histone modification [4]. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the ... | Domain | |
PF17811 | Jumonji helical domain (JHD) | Jumonji helical domain | This 4-helix bundle domain is associated with the Jumonji domain Pfam:PF02373 [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001965 | Zinc finger, PHD-type | Domain | |
IPR003347 | JmjC domain | Domain | |
IPR041070 | Jumonji, helical domain | Domain | |
IPR019787 | Zinc finger, PHD-finger | Domain | |
IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily | |
IPR019786 | Zinc finger, PHD-type, conserved site | Conserved Site | |
IPR050690 | JHDM1 Histone Demethylase | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
Q9UPP1 | :