3J9U
Yeast V-ATPase state 2
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
L [auth P] | SCOP2B Superfamily | ARM repeat-like | 8033221 | 3000116 | SCOP2B (2022-06-29) |
N [auth O] | SCOP2B Superfamily | Vacuolar ATP synthase subunit C | 8042806 | 3001744 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth M] | ATP-synt_D | e3j9uM1 | A: alpha bundles | X: V-type proton ATPase subunit D (From Topology) | H: V-type proton ATPase subunit D (From Topology) | T: V-type proton ATPase subunit D | F: ATP-synt_D | ECOD (1.6) |
B [auth N] | ATP-synt_F | e3j9uN1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: AtpF-like (From Topology) | T: AtpF-like | F: ATP-synt_F | ECOD (1.6) |
C | ATP-synt_ab_N | e3j9uC2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
C | ATP-synt_ab_C | e3j9uC1 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
C | ATP-synt_ab_Xtn | e3j9uC3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
C | ATP-synt_ab | e3j9uC4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
E | ATP-synt_ab_N | e3j9uE3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
E | ATP-synt_ab_C | e3j9uE1 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
E | ATP-synt_ab_Xtn | e3j9uE2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
E | ATP-synt_ab | e3j9uE4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
G [auth A] | ATP-synt_ab_N | e3j9uA4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
G [auth A] | ATP-synt_ab_C | e3j9uA3 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
G [auth A] | ATP-synt_ab_Xtn | e3j9uA2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
G [auth A] | ATP-synt_ab | e3j9uA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
D | ATP-synt_ab_N | e3j9uD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
D | ATP-synt_ab_C | e3j9uD3 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
D | ATP-synt_ab | e3j9uD2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
F | ATP-synt_ab_N | e3j9uF2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
F | ATP-synt_ab_C | e3j9uF1 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
F | ATP-synt_ab | e3j9uF3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
H [auth B] | ATP-synt_ab_N | e3j9uB2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
H [auth B] | ATP-synt_ab_C | e3j9uB1 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
H [auth B] | ATP-synt_ab | e3j9uB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
I [auth Q] | vATP-synt_AC39_3rd | e3j9uQ2 | A: alpha bundles | X: V-type ATP synthase subunit C | H: V-type ATP synthase subunit C (From Topology) | T: V-type ATP synthase subunit C | F: vATP-synt_AC39_3rd | ECOD (1.6) |
I [auth Q] | vATP-synt_AC39_1st | e3j9uQ1 | A: alpha bundles | X: V-type ATP synthase subunit C | H: V-type ATP synthase subunit C (From Topology) | T: V-type ATP synthase subunit C | F: vATP-synt_AC39_1st | ECOD (1.6) |
J [auth L] | V-ATPase_G | e3j9uL1 | A: extended segments | X: V-type proton ATPase subunit G (From Topology) | H: V-type proton ATPase subunit G (From Topology) | T: V-type proton ATPase subunit G | F: V-ATPase_G | ECOD (1.6) |
O [auth H] | V-ATPase_G | e3j9uH1 | A: extended segments | X: V-type proton ATPase subunit G (From Topology) | H: V-type proton ATPase subunit G (From Topology) | T: V-type proton ATPase subunit G | F: V-ATPase_G | ECOD (1.6) |
Q [auth J] | V-ATPase_G | e3j9uJ1 | A: extended segments | X: V-type proton ATPase subunit G (From Topology) | H: V-type proton ATPase subunit G (From Topology) | T: V-type proton ATPase subunit G | F: V-ATPase_G | ECOD (1.6) |
K | vATP-synt_E_C | e3j9uK1 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: V-type ATPase subunit E (From Topology) | T: V-type ATPase subunit E | F: vATP-synt_E_C | ECOD (1.6) |
K | vATP-synt_E_N | e3j9uK2 | A: extended segments | X: Helical region in V-type proton ATPase subunit E (From Topology) | H: Helical region in V-type proton ATPase subunit E (From Topology) | T: Helical region in V-type proton ATPase subunit E | F: vATP-synt_E_N | ECOD (1.6) |
P [auth G] | vATP-synt_E_C | e3j9uG2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: V-type ATPase subunit E (From Topology) | T: V-type ATPase subunit E | F: vATP-synt_E_C | ECOD (1.6) |
P [auth G] | vATP-synt_E_N | e3j9uG1 | A: extended segments | X: Helical region in V-type proton ATPase subunit E (From Topology) | H: Helical region in V-type proton ATPase subunit E (From Topology) | T: Helical region in V-type proton ATPase subunit E | F: vATP-synt_E_N | ECOD (1.6) |
R [auth I] | vATP-synt_E_C | e3j9uI2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: V-type ATPase subunit E (From Topology) | T: V-type ATPase subunit E | F: vATP-synt_E_C | ECOD (1.6) |
R [auth I] | vATP-synt_E_N | e3j9uI1 | A: extended segments | X: Helical region in V-type proton ATPase subunit E (From Topology) | H: Helical region in V-type proton ATPase subunit E (From Topology) | T: Helical region in V-type proton ATPase subunit E | F: vATP-synt_E_N | ECOD (1.6) |
L [auth P] | V-ATPase_H_C | e3j9uP1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: V-ATPase_H_C | ECOD (1.6) |
M [auth b] | V_ATPase_I_2nd | e3j9ub3 | A: alpha bundles | X: helical bundle domain in vacuolar ATP synthase subunit C (From Topology) | H: helical bundle domain in vacuolar ATP synthase subunit C (From Topology) | T: helical bundle domain in vacuolar ATP synthase subunit C | F: V_ATPase_I_2nd | ECOD (1.6) |
M [auth b] | V_ATPase_I_3rd | e3j9ub1 | A: a+b two layers | X: Alpha-beta plaits | H: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology) | T: ferredoxin-like domain in vacuolar ATP synthase subunit C | F: V_ATPase_I_3rd | ECOD (1.6) |
M [auth b] | V_ATPase_I_1st | e3j9ub2 | A: a+b two layers | X: Alpha-beta plaits | H: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology) | T: ferredoxin-like domain in vacuolar ATP synthase subunit C | F: V_ATPase_I_1st | ECOD (1.6) |
N [auth O] | V-ATPase_C_1st | e3j9uO3 | A: alpha bundles | X: helical bundle domain in vacuolar ATP synthase subunit C (From Topology) | H: helical bundle domain in vacuolar ATP synthase subunit C (From Topology) | T: helical bundle domain in vacuolar ATP synthase subunit C | F: V-ATPase_C_1st | ECOD (1.6) |
N [auth O] | V-ATPase_C_3rd | e3j9uO1 | A: a+b two layers | X: Alpha-beta plaits | H: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology) | T: ferredoxin-like domain in vacuolar ATP synthase subunit C | F: V-ATPase_C_3rd | ECOD (1.6) |
N [auth O] | V-ATPase_C_2nd | e3j9uO2 | A: a+b two layers | X: Alpha-beta plaits | H: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology) | T: ferredoxin-like domain in vacuolar ATP synthase subunit C | F: V-ATPase_C_2nd | ECOD (1.6) |
AA [auth V] | ATP-synt_C | e3j9uV2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
BA [auth W] | ATP-synt_C | e3j9uW2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
S [auth U] | ATP-synt_C | e3j9uU2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
T [auth X] | ATP-synt_C | e3j9uX1 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
U [auth a] | ATP-synt_C | e3j9ua1 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
V [auth R] | ATP-synt_C | e3j9uR2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
W [auth Z] | ATP-synt_C | e3j9uZ2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
X [auth S] | ATP-synt_C | e3j9uS2 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
Y | ATP-synt_C | e3j9uY1 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
Z [auth T] | ATP-synt_C | e3j9uT1 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth M] | PF01813 | ATP synthase subunit D (ATP-synt_D) | ATP synthase subunit D | - | Family |
B [auth N] | PF01990 | ATP synthase (F/14-kDa) subunit (ATP-synt_F) | ATP synthase (F/14-kDa) subunit | - | Family |
C, E, G [auth A] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
C, E, G [auth A] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
C, E, G [auth A] | PF16886 | ATPsynthase alpha/beta subunit N-term extension (ATP-synt_ab_Xtn) | ATPsynthase alpha/beta subunit N-term extension | - | Family |
C, E, G [auth A] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
C, E, G [auth A] | PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
D, F, H [auth B] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
D, F, H [auth B] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
D, F, H [auth B] | PF01496 | V-type ATPase 116kDa subunit family (V_ATPase_I) | V-type ATPase 116kDa subunit family | - | Family |
D, F, H [auth B] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
I [auth Q] | PF01992 | ATP synthase (C/AC39) subunit (vATP-synt_AC39) | ATP synthase (C/AC39) subunit | - | Family |
J [auth L], O [auth H], Q [auth J] | PF03179 | Vacuolar (H+)-ATPase G subunit (V-ATPase_G) | Vacuolar (H+)-ATPase G subunit | - | Coiled-coil |
K, P [auth G], R [auth I] | PF01991 | ATP synthase (E/31 kDa) subunit (vATP-synt_E) | ATP synthase (E/31 kDa) subunit | - | Family |
L [auth P] | PF11698 | V-ATPase subunit H (V-ATPase_H_C) | V-ATPase subunit H | - | Repeat |
L [auth P] | PF03224 | V-ATPase subunit H (V-ATPase_H_N) | V-ATPase subunit H | - | Repeat |
N [auth O] | PF03223 | V-ATPase subunit C (V-ATPase_C) | V-ATPase subunit C | - | Family |
PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Proton or Sodium translocating F-type, V-type and A-type ATPases | V-type and F-type ATPases |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Vacuolar ATPase (V-ATPase) | Complete V-ATPase by cryo-EM, state 1 |