3J7E | pdb_00003j7e

Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth F]Transline3j7eF1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: TranslinT: TranslinF: TranslinECOD (v295.2)
F [auth D]Transline3j7eD1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: TranslinT: TranslinF: TranslinECOD (v295.2)
D [auth B]Transline3j7eB1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: TranslinT: TranslinF: TranslinECOD (v295.2)
B [auth H]Transline3j7eH1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: TranslinT: TranslinF: TranslinECOD (v295.2)
G [auth E]Transline3j7eE1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: TranslinT: TranslinF: TranslinECOD (v295.2)
E [auth C]Transline3j7eC1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: TranslinT: TranslinF: TranslinECOD (v295.2)
C [auth A]Transline3j7eA1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: TranslinT: TranslinF: TranslinECOD (v295.2)
A [auth L]Transline3j7eL1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: TranslinT: TranslinF: TranslinECOD (v295.2)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth H],
D [auth B],
F [auth D],
H [auth F]		H16.V5 Fab VH Mus musculus (house mouse) IGHV1-87*01, IGHJ2*01 V-DOMAIN VH IG FV-HEAVY_KAPPA IMGT (202632-0)
A [auth L],
C [auth A],
E [auth C],
G [auth E]		H16.V5 Fab V-KAPPA Mus musculus (house mouse) IGKV8-24*01, IGKJ5*01 V-DOMAIN V-KAPPA IG FV-HEAVY_KAPPA IMGT (202632-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth H],
D [auth B],
F [auth D],
H [auth F]		Heavy ChainIGHV1 --SAbDab (2026-08-21)
A [auth L],
C [auth A],
E [auth C],
G [auth E]		Light ChainIGKV8 Kappa-SAbDab (2026-08-21)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth L],
C [auth A],
E [auth C],
G [auth E]		PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth H],
D [auth B],
F [auth D],
H [auth F]		H16.V5 Fab heavy chain- -
A [auth L],
C [auth A],
E [auth C],
G [auth E]		H16.V5 Fab light chain-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR050199Immunoglobulin Heavy VariableFamily
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR013106Immunoglobulin V-set domainDomain
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR003599Immunoglobulin domain subtypeDomain
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR007110Immunoglobulin-like domainDomain
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR050150Immunoglobulin Variable Light ChainFamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR013106Immunoglobulin V-set domainDomain
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR003599Immunoglobulin domain subtypeDomain
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR007110Immunoglobulin-like domainDomain