3II4
Structure of mycobacterial lipoamide dehydrogenase bound to a triazaspirodimethoxybenzoyl inhibitor
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pyr_redox_dim | e3ii4A2 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain (From Topology) | T: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | F: Pyr_redox_dim | ECOD (1.6) |
A | Pyr_redox_2_1 | e3ii4A3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Pyr_redox_2_1 | ECOD (1.6) |
A | Pyr_redox_2 | e3ii4A1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Pyr_redox_2 | ECOD (1.6) |
B | Pyr_redox_dim | e3ii4B5 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain (From Topology) | T: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | F: Pyr_redox_dim | ECOD (1.6) |
B | Pyr_redox_2_1 | e3ii4B6 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Pyr_redox_2_1 | ECOD (1.6) |
B | Pyr_redox_2 | e3ii4B4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Pyr_redox_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (4.3.0) |
A | 3.30.390.30 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
B | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (4.3.0) |
B | 3.30.390.30 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12831 | FAD dependent oxidoreductase (FAD_oxidored) | FAD dependent oxidoreductase | - | Family | |
PF00070 | Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox) | Pyridine nucleotide-disulphide oxidoreductase | This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. | Domain | |
PF02852 | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain (Pyr_redox_dim) | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004099 | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | Domain | |
IPR006258 | Dihydrolipoamide dehydrogenase | Family | |
IPR001100 | Pyridine nucleotide-disulphide oxidoreductase, class I | Family | |
IPR016156 | FAD/NAD-linked reductase, dimerisation domain superfamily | Homologous Superfamily | |
IPR036188 | FAD/NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR023753 | FAD/NAD(P)-binding domain | Domain | |
IPR050151 | Class-I pyridine nucleotide-disulfide oxidoreductase | Family | |
IPR012999 | Pyridine nucleotide-disulphide oxidoreductase, class I, active site | Active Site |