Crystal structure of a putative dna binding protein (bt_1116) from bacteroides thetaiotaomicron vpi-5482 at 1.50 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d3htnc_ | Alpha and beta proteins (a+b) | AF0104/ALDC/Ptd012-like | AF0104/ALDC/Ptd012-like | automated matches | automated matches | (Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ], | SCOPe (2.08) |
| B | d3htnb_ | Alpha and beta proteins (a+b) | AF0104/ALDC/Ptd012-like | AF0104/ALDC/Ptd012-like | automated matches | automated matches | (Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ], | SCOPe (2.08) |
| A | d3htna_ | Alpha and beta proteins (a+b) | AF0104/ALDC/Ptd012-like | AF0104/ALDC/Ptd012-like | automated matches | automated matches | (Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | Ribosomal_L36 | e3htnC1 | A: beta barrels | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: Ribosomal_L36 | ECOD (v294.2) |
| B | Ribosomal_L36 | e3htnB1 | A: beta barrels | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: Ribosomal_L36 | ECOD (v294.2) |
| A | ubiquitin | e3htnA1 | A: beta barrels | X: TIM beta/alpha-barrel | H: FAD-dependent thiol oxidase | T: FAD-dependent thiol oxidase | F: ubiquitin | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 3.30.1330.80 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
| B | 3.30.1330.80 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
| A | 3.30.1330.80 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF03479 | Plants and Prokaryotes Conserved (PCC) domain (PCC) | Plants and Prokaryotes Conserved (PCC) domain | This is a Plants and Prokaryotes Conserved (PPC) domain found in proteins that contain AT-hook motifs Pfam:PF02178 which strongly suggests a DNA-binding function for the proteins as a whole. Proteins with PPC domains are found in Bacteria, Archaea an ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Putative DNA binding protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR005175 | PPC domain | Domain |














