3HTK
Crystal structure of Mms21 and Smc5 complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | COG5627 | e3htkC2 | A: alpha bundles | X: Long alpha-hairpin | H: Endosomal sorting complex assembly domains (From Topology) | T: Endosomal sorting complex assembly domains | F: COG5627 | ECOD (1.6) |
C | zf-Nse | e3htkC1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-Nse | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.5.170 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
B | 1.20.5.110 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
C | 1.20.120.1010 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) | |
C | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22326 | E3 SUMO-protein ligase MMS21, N-terminal domain (MMS21_N) | E3 SUMO-protein ligase MMS21, N-terminal domain | This domain is found at the N-terminal end of E3 SUMO-protein ligase MMS21 from Saccharomyces cerevisiae and similar fungal proteins. MMS21 acts in a DNA repair pathway for removal of UV-induced DNA damage that is distinct from classical nucleotide e ... | Domain | |
PF11789 | Zinc-finger of the MIZ type in Nse subunit (zf-Nse) | Zinc-finger of the MIZ type in Nse subunit | Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR027131 | Structural maintenance of chromosomes protein 5 | Family | |
IPR003395 | RecF/RecN/SMC, N-terminal | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR027131 | Structural maintenance of chromosomes protein 5 | Family | |
IPR003395 | RecF/RecN/SMC, N-terminal | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR004181 | Zinc finger, MIZ-type | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR026846 | E3 SUMO-protein ligase Nse2 (Mms21) | Family |