3HJH
A rigid N-terminal clamp restrains the motor domains of the bacterial transcription-repair coupling factor
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3hjha1 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Tandem AAA-ATPase domain | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UB2H_1 | e3hjhA2 | A: beta meanders | X: Colicin E3 ribonuclease domain-like | H: UvrB interaction domain (From Topology) | T: UvrB interaction domain | F: UB2H_1 | ECOD (1.6) |
A | PRK10689 | e3hjhA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PRK10689 | ECOD (1.6) |
A | ResIII | e3hjhA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ResIII | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.11180 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A | 3.30.2060.10 | Alpha Beta | 2-Layer Sandwich | Penicillin-binding protein 1b fold | Penicillin-binding protein 1b domain | CATH (4.3.0) |
A | 3.40.50.11140 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21132 | MFD, D3 domain (MFD_D3) | MFD, D3 domain | The transcription-repair coupling factor (TRCF, also known as MFD) couples transcription and DNA repair in bacteria. MFD removes transcription elongation complexes stalled at DNA lesions and recruits the nucleotide excision repair (NER) machinery to ... | Domain | |
PF17757 | UvrB interaction domain (UvrB_inter) | UvrB interaction domain | This domain is found in the UvrB protein where it interacts with the UvrA protein [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036101 | CarD-like/TRCF, RNAP-interacting domain superfamily | Homologous Superfamily | |
IPR037235 | TRCF-like, C-terminal D7 domain | Homologous Superfamily | |
IPR048635 | Transcription-repair-coupling factor, D3 domain | Domain | |
IPR011545 | DEAD/DEAH box helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR005118 | Transcription-repair-coupling factor, C-terminal domain | Domain | |
IPR004576 | Transcription-repair coupling factor | Family | |
IPR041471 | UvrB, interaction domain | Domain | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR047112 | ATP-dependent DNA helicase RecG/Transcription-repair-coupling factor | Family | |
IPR003711 | CarD-like/TRCF, RNAP-interacting domain | Domain |