3HEJ
Crystal structure of Staphylococcal nuclease variant Delta+PHS T62R at cryogenic temperature
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth B] | d3hejb_ | All beta proteins | OB-fold | Staphylococcal nuclease | Staphylococcal nuclease | Staphylococcal nuclease | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
A | d3heja_ | All beta proteins | OB-fold | Staphylococcal nuclease | Staphylococcal nuclease | Staphylococcal nuclease | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
B [auth D] | d3hejd_ | All beta proteins | OB-fold | Staphylococcal nuclease | Staphylococcal nuclease | Staphylococcal nuclease | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
D [auth C] | d3hejc_ | All beta proteins | OB-fold | Staphylococcal nuclease | Staphylococcal nuclease | Staphylococcal nuclease | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth B] | SCOP2B Superfamily | Staphylococcal nuclease | 8041753 | 3000443 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Staphylococcal nuclease | 8041753 | 3000443 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | Staphylococcal nuclease | 8041753 | 3000443 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Staphylococcal nuclease | 8041753 | 3000443 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth B] | SNase | e3hejB1 | A: beta barrels | X: OB-fold | H: Staphylococcal nuclease (From Topology) | T: Staphylococcal nuclease | F: SNase | ECOD (1.6) |
A | SNase | e3hejA1 | A: beta barrels | X: OB-fold | H: Staphylococcal nuclease (From Topology) | T: Staphylococcal nuclease | F: SNase | ECOD (1.6) |
B [auth D] | SNase | e3hejD1 | A: beta barrels | X: OB-fold | H: Staphylococcal nuclease (From Topology) | T: Staphylococcal nuclease | F: SNase | ECOD (1.6) |
D [auth C] | SNase | e3hejC1 | A: beta barrels | X: OB-fold | H: Staphylococcal nuclease (From Topology) | T: Staphylococcal nuclease | F: SNase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth B] | 2.40.50.90 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
A | 2.40.50.90 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
B [auth D] | 2.40.50.90 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
D [auth C] | 2.40.50.90 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth D], C [auth B], D [auth C] | PF00565 | Staphylococcal nuclease homologue (SNase) | Staphylococcal nuclease homologue | Present in all three domains of cellular life. Four copies in the transcriptional coactivator p100: these, however, appear to lack the active site residues of Staphylococcal nuclease. Positions 14 (Asp-21), 34 (Arg-35), 39 (Asp-40), 42 (Glu-43) and 1 ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth D], C [auth B], D [auth C] | IPR016071 | Staphylococcal nuclease (SNase-like), OB-fold | Domain |
A, B [auth D], C [auth B], D [auth C] | IPR035437 | SNase-like, OB-fold superfamily | Homologous Superfamily |
A, B [auth D], C [auth B], D [auth C] | IPR002071 | Thermonuclease active site | Active Site |