3GIQ
Crystal structure of N-acyl-D-Glutamate Deacylase from Bordetella Bronchiseptica complexed with zinc and phosphonate inhibitor, a mimic of the reaction tetrahedral intermediate.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3giqa1 | All beta proteins | Composite domain of metallo-dependent hydrolases | Composite domain of metallo-dependent hydrolases | automated matches | automated matches | Alcaligenes bronchisepticus (Bordetella bronchiseptica ) [TaxId: 518 ], | SCOPe (2.08) |
A | d3giqa2 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Metallo-dependent hydrolases | automated matches | automated matches | Alcaligenes bronchisepticus (Bordetella bronchiseptica ) [TaxId: 518 ], | SCOPe (2.08) |
B | d3giqb1 | All beta proteins | Composite domain of metallo-dependent hydrolases | Composite domain of metallo-dependent hydrolases | automated matches | automated matches | Alcaligenes bronchisepticus (Bordetella bronchiseptica ) [TaxId: 518 ], | SCOPe (2.08) |
B | d3giqb2 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Metallo-dependent hydrolases | automated matches | automated matches | Alcaligenes bronchisepticus (Bordetella bronchiseptica ) [TaxId: 518 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Urease_alpha_1 | e3giqA5 | A: beta sandwiches | X: Composite domain of metallo-dependent hydrolases (From Topology) | H: Composite domain of metallo-dependent hydrolases (From Topology) | T: Composite domain of metallo-dependent hydrolases | F: Urease_alpha_1 | ECOD (1.6) |
A | Amidohydro_1_N | e3giqA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Amidohydro_1_N | ECOD (1.6) |
B | Urease_alpha_1 | e3giqB5 | A: beta sandwiches | X: Composite domain of metallo-dependent hydrolases (From Topology) | H: Composite domain of metallo-dependent hydrolases (From Topology) | T: Composite domain of metallo-dependent hydrolases | F: Urease_alpha_1 | ECOD (1.6) |
B | Amidohydro_1_N | e3giqB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Amidohydro_1_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.40.10 | Mainly Beta | Roll | Urease, subunit C | domain 1 | CATH (4.3.0) |
A | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (4.3.0) |
A | 3.30.1490.130 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
B | 2.30.40.10 | Mainly Beta | Roll | Urease, subunit C | domain 1 | CATH (4.3.0) |
B | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (4.3.0) |
B | 3.30.1490.130 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07969 | Amidohydrolase family (Amidohydro_3) | Amidohydrolase family | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
N-acyl-D-glutamate deacylase |
| - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013108 | Amidohydrolase 3 | Domain | |
IPR023100 | D-aminoacylase, insert domain superfamily | Homologous Superfamily | |
IPR011059 | Metal-dependent hydrolase, composite domain superfamily | Homologous Superfamily | |
IPR032466 | Metal-dependent hydrolase | Homologous Superfamily |