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 3FD2 | pdb_00003fd2

Crystal structure of mMsoI/DNA complex with calcium

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad3fd2a1 Alpha and beta proteins (a+b) Homing endonuclease-like Homing endonucleases Group I mobile intron endonuclease automated matches (Monomastix sp. OKE-1 ) [TaxId: 141716 ], (Monomastix sp. OKE-1 ) [TaxId: 141716 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyHoming endonucleases 8032721 3000266 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyHoming endonucleases 8032721 3000266 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGlyco_hydro_3e3fd2A1 A: alpha arraysX: Alpha-beta plaitsH: Origin of replication-binding domainsT: Origin of replication-binding domainsF: Glyco_hydro_3ECOD (v295.2)
ALipoprotein_1e3fd2A2 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Lipoprotein_1ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleasesCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
5'-D(*CP*GP*GP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*TP*TP*CP*TP*GP*C)-3'---
5'-D(*GP*CP*AP*GP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*CP*CP*G)-3'---
Site-specific DNA endonuclease I-MsoI - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR004860Homing endonuclease, LAGLIDADG domainDomain
IPR027434Homing endonucleaseHomologous Superfamily