Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad3f4na_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Bd3f4nb_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Cd3f4nc1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Cd3f4nc2 Artifacts Tags Tags Tags N-terminal Tags (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Dd3f4nd_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Ed3f4ne_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Fd3f4nf_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Gd3f4ng_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Hd3f4nh_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Pyridoxine 5'-phosphate synthase Pyridoxine 5'-phosphate synthase automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyPyridoxine 5'-phosphate synthase 8074917 4003313 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPyridoxine 5'-phosphate synthase 8074918 3000586 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8074918 3000586 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8074918 3000586 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8074918 3000586 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8074918 3000586 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8074918 3000586 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8074918 3000586 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPyridoxine 5'-phosphate synthase 8074918 3000586 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APdxJe3f4nA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
BPdxJe3f4nB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
CPdxJe3f4nC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
DPdxJe3f4nD1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
EPdxJe3f4nE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
FPdxJe3f4nF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
GPdxJe3f4nG1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)
HPdxJe3f4nH1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PdxJECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
B3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
C3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
D3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
E3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
F3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
G3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
H3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF03740Pyridoxal phosphate biosynthesis protein PdxJ (PdxJ)Pyridoxal phosphate biosynthesis protein PdxJMembers of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synt ...Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR036130Pyridoxine 5'-phosphate synthaseHomologous Superfamily
A, B, C, D, E
IPR013785Aldolase-type TIM barrelHomologous Superfamily
A, B, C, D, E
IPR004569Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJFamily