3F23
Crystal structure of Zalpha in complex with d(CGGCCG)
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3f23a_ | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | Z-DNA binding domain | Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d3f23b_ | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | Z-DNA binding domain | Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d3f23c_ | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | Z-DNA binding domain | Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8057679 | 3000034 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8057679 | 3000034 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Winged helix DNA-binding domain | 8057679 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | z-alpha | e3f23A1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: z-alpha | ECOD (1.6) |
B | z-alpha | e3f23B1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: z-alpha | ECOD (1.6) |
C | z-alpha | e3f23C1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: z-alpha | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
C | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02295 | Adenosine deaminase z-alpha domain (z-alpha) | Adenosine deaminase z-alpha domain | This family consists of the N-terminus and thus the z-alpha domain of double-stranded RNA-specific adenosine deaminase (ADAR), an RNA- editing enzyme. The z-alpha domain is a Z-DNA binding domain, and binding of this region to B-DNA has been shown to ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR044456 | ADAR1, first double-stranded RNA binding domain | Domain | |
IPR002466 | Adenosine deaminase/editase | Domain | |
IPR042371 | Z-binding domain | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR044457 | ADAR1, third double-stranded RNA binding domain | Domain | |
IPR014720 | Double-stranded RNA-binding domain | Domain |