3E9L
Crystal Structure of Human Prp8, Residues 1755-2016
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3e9la1 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | Prp8 beta-finger domain-like | Pre-mRNA splicing factor 8, Prp8 / Spp42 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.420.230 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
A | 1.20.80.40 | Mainly Alpha | Up-down Bundle | Acyl-CoA Binding Protein | Prp8 RNase H domain, fingers region | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12134 | PRP8 domain IV core (PRP8_domainIV) | PRP8 domain IV core | This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The dom ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012984 | PROCT domain | Domain | |
IPR012591 | PRO8NT domain | Domain | |
IPR019580 | Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding | Domain | |
IPR027652 | Pre-mRNA-processing-splicing factor 8 | Family | |
IPR043172 | Prp8 RNase domain IV, palm region | Homologous Superfamily | |
IPR012592 | PROCN domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR043173 | Prp8 RNase domain IV, fingers region | Homologous Superfamily | |
IPR021983 | PRP8 domain IV core | Domain | |
IPR019581 | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding | Domain | |
IPR037518 | MPN domain | Domain | |
IPR019582 | RNA recognition motif, spliceosomal PrP8 | Domain | |
IPR042516 | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily | Homologous Superfamily | |
IPR000555 | JAB1/MPN/MOV34 metalloenzyme domain | Domain |