3DPU
RocCOR domain tandem of Rab family protein (Roco)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | COR WHD tandem-like | 8044854 | 4004178 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Roc-like | 8050902 | 4007106 | SCOP2 (2022-06-29) |
A | SCOP2 Family | COR TBP-fold domain-like | 8053526 | 4007612 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Winged helix DNA-binding domain | 8053521 | 3000034 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ras-like P-loop GTPases | 8053531 | 3002022 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | COR C-terminal lobe-like | 8053527 | 3002202 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Winged helix DNA-binding domain | 8053520 | 3000034 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8053521 | 3000034 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | COR C-terminal lobe-like | 8053527 | 3002202 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8053520 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | COR_1st | e3dpuA4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: COR_1st | ECOD (1.6) |
A | COR_2nd | e3dpuA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: COR_2nd | ECOD (1.6) |
A | EUF08415 | e3dpuA1 | A: a+b two layers | X: TBP-like | H: C-terminal TBP-like domain of Roc (From Topology) | T: C-terminal TBP-like domain of Roc | F: EUF08415 | ECOD (1.6) |
A | Ras_1 | e3dpuA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras_1 | ECOD (1.6) |
B | COR_1st | e3dpuB3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: COR_1st | ECOD (1.6) |
B | COR_2nd | e3dpuB2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: COR_2nd | ECOD (1.6) |
B | EUF08415 | e3dpuB1 | A: a+b two layers | X: TBP-like | H: C-terminal TBP-like domain of Roc (From Topology) | T: C-terminal TBP-like domain of Roc | F: EUF08415 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 1.10.10.2200 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
A | 3.30.310.200 | Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | CATH (4.3.0) | |
B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B | 1.10.10.2200 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
B | 3.30.310.200 | Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16095 | C-terminal of Roc, COR, domain (COR) | C-terminal of Roc, COR, domain | - | Family | |
PF08477 | Ras of Complex, Roc, domain of DAPkinase (Roc) | Ras of Complex, Roc, domain of DAPkinase | Roc, or Ras of Complex, proteins are mitochondrial Rho proteins (Miro-1, Swiss:Q8IXI2, and Miro-2, Swiss:Q8IXI1) and atypical Rho GTPases. Full-length proteins have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005225 | Small GTP-binding domain | Domain | |
IPR025875 | Leucine rich repeat 4 | Repeat | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR020859 | Roc domain | Domain | |
IPR001611 | Leucine-rich repeat | Repeat | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR050836 | SDS22/Internalin LRR-containing | Family | |
IPR003591 | Leucine-rich repeat, typical subtype | Repeat | |
IPR032171 | C-terminal of Roc (COR) domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |