3DHW
Crystal structure of methionine importer MetNI
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Binding-protein-dependent transport system inner membrane component (MetI-like) | 8058245 | 4002760 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | MetI-like | 8058246 | 3001716 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | MetI-like | 8058246 | 3001716 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | MetI-like | 8058246 | 3001716 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | MetI-like | 8058246 | 3001716 | SCOP2B (2022-06-29) |
C | SCOP2 Family | ABC transporter ATPase domain-like | 8018378 | 4003976 | SCOP2 (2022-06-29) |
C | SCOP2 Family | NIL domain-like | 8018382 | 4001937 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | ABC transporter-like P-loop ATPases | 8018379 | 3002020 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | ACT-like | 8018383 | 3000006 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | ACT-like | 8018383 | 3000006 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8018379 | 3002020 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | ACT-like | 8018383 | 3000006 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8018379 | 3002020 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8018379 | 3002020 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | ACT-like | 8018383 | 3000006 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | BPD_transp_1 | e3dhwA1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC importer transmembrane domain fold (From Topology) | T: Type I ABC importer transmembrane domain fold | F: BPD_transp_1 | ECOD (1.6) |
B | BPD_transp_1 | e3dhwB1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC importer transmembrane domain fold (From Topology) | T: Type I ABC importer transmembrane domain fold | F: BPD_transp_1 | ECOD (1.6) |
E | BPD_transp_1 | e3dhwE1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC importer transmembrane domain fold (From Topology) | T: Type I ABC importer transmembrane domain fold | F: BPD_transp_1 | ECOD (1.6) |
F | BPD_transp_1 | e3dhwF1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC importer transmembrane domain fold (From Topology) | T: Type I ABC importer transmembrane domain fold | F: BPD_transp_1 | ECOD (1.6) |
C | NIL | e3dhwC1 | A: a+b two layers | X: Alpha-beta plaits | H: ACT-like (From Topology) | T: ACT-like | F: NIL | ECOD (1.6) |
C | ABC_tran | e3dhwC2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
D | NIL | e3dhwD1 | A: a+b two layers | X: Alpha-beta plaits | H: ACT-like (From Topology) | T: ACT-like | F: NIL | ECOD (1.6) |
D | ABC_tran | e3dhwD2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
G | NIL | e3dhwG1 | A: a+b two layers | X: Alpha-beta plaits | H: ACT-like (From Topology) | T: ACT-like | F: NIL | ECOD (1.6) |
G | ABC_tran | e3dhwG2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
H | NIL | e3dhwH1 | A: a+b two layers | X: Alpha-beta plaits | H: ACT-like (From Topology) | T: ACT-like | F: NIL | ECOD (1.6) |
H | ABC_tran | e3dhwH2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00528 | Binding-protein-dependent transport system inner membrane component (BPD_transp_1) | Binding-protein-dependent transport system inner membrane component | - | Family | |
PF09383 | NIL domain (NIL) | NIL domain | This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conse ... | Domain | |
PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000515 | ABC transporter type 1, transmembrane domain MetI-like | Domain | |
IPR035906 | MetI-like superfamily | Homologous Superfamily | |
IPR051322 | Amino Acid ABC Transporter Permease | Family | |
IPR017871 | ABC transporter-like, conserved site | Conserved Site | |
IPR050086 | Methionine Import ATP-binding | Family | |
IPR045865 | ACT-like domain | Homologous Superfamily | |
IPR041701 | Methionine import ATP-binding protein MetN, ATP-binding domain | Domain | |
IPR003439 | ABC transporter-like, ATP-binding domain | Domain | |
IPR012692 | ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria | Family | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR018449 | NIL domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | ABC transporters | Binding-protein-dependent transport system |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | ATP Binding Cassette (ABC) Transporters | MetNI Methionine uptake transporter complex |