3CTD
Crystal structure of a putative AAA family ATPase from Prochlorococcus marinus subsp. pastoris
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3ctda1 | All alpha proteins | post-AAA+ oligomerization domain-like | post-AAA+ oligomerization domain-like | MgsA/YrvN C-terminal domain-like | Uncharacterized protein YrvN | (Prochlorococcus marinus subsp. pastoris str. CCMP1986 ) [TaxId: 59919 ], | SCOPe (2.08) |
B | d3ctdb_ | All alpha proteins | post-AAA+ oligomerization domain-like | post-AAA+ oligomerization domain-like | MgsA/YrvN C-terminal domain-like | Uncharacterized protein YrvN | (Prochlorococcus marinus subsp. pastoris str. CCMP1986 ) [TaxId: 59919 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | MgsA/YrvN C-terminal domain-like | 8027922 | 4001459 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Post-AAA+ oligomerization domain-like | 8040301 | 3000691 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Post-AAA+ oligomerization domain-like | 8040301 | 3000691 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | MgsA_C | e3ctdA1 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: MgsA_C | ECOD (1.6) |
B | MgsA_C | e3ctdB1 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: MgsA_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.272.10 | Mainly Alpha | Up-down Bundle | Zinc Finger, Delta Prime | domain 3 | CATH (4.3.0) |
A | 1.10.3710.10 | Mainly Alpha | Orthogonal Bundle | post-AAA+ oligomerization domain-like | DNA polymerase III clamp loader subunits, C-terminal domain | CATH (4.3.0) |
B | 1.20.272.10 | Mainly Alpha | Up-down Bundle | Zinc Finger, Delta Prime | domain 3 | CATH (4.3.0) |
B | 1.10.3710.10 | Mainly Alpha | Orthogonal Bundle | post-AAA+ oligomerization domain-like | DNA polymerase III clamp loader subunits, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12002 | MgsA AAA+ ATPase C terminal (MgsA_C) | MgsA AAA+ ATPase C terminal | The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities [1]. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication [1]. Additionally, MgsA ma ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008921 | DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR021886 | MgsA AAA+ ATPase C-terminal | Domain | |
IPR051314 | AAA ATPase RarA/MGS1/WRNIP1 | Family | |
IPR003959 | ATPase, AAA-type, core | Domain | |
IPR032423 | AAA C-terminal domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |