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3C0C
X-ray Crystal Structure of the Rat Endophilin A2 SH3 Domain
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: SCOP/SCOPe Classification
SCOP-e Database Homepage
Chains
Domain Info
Class
Fold
Superfamily
Family
Domain
Species
Provenance Source (Version)
A
d3c0ca_
All beta proteins
SH3-like barrel
SH3-domain
automated matches
automated matches
Norway rat
(
Rattus norvegicus
) [TaxId:
10116
],
SCOPe (2.08)
Domain Annotation: SCOP2 Classification
SCOP2 Database Homepage
Chains
Type
Family Name
Domain Identifier
Family Identifier
Provenance Source (Version)
A
SCOP2 Family
SH3-domain
8067919
4000369
SCOP2 (2022-06-29)
A
SCOP2 Superfamily
SH3-domain
8067920
3000153
SCOP2 (2022-06-29)
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
SH3_1
e3c0cA1
A: beta barrels
X: SH3
H: SH3
T: SH3
F: SH3_1
ECOD (1.6)
Domain Annotation: CATH
CATH Database Homepage
Chain
Domain
Class
Architecture
Topology
Homology
Provenance Source (Version)
A
2.30.30.40
Mainly Beta
Roll
SH3 type barrels.
SH3 Domains
CATH (4.3.0)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF00018
SH3 domain (SH3_1)
SH3 domain
SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel.
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Endophilin-A2
protein binding
binding
enzyme binding
GTPase binding
SH3 domain binding
protein domain specific binding
transmembrane transporter binding
lipid binding
adrenergic receptor binding
signaling receptor binding
G protein-coupled receptor binding
beta-1 adrenergic receptor binding
phosphatase binding
identical protein binding
cellular response to stimulus
multicellular organismal process
regulation of postsynaptic membrane potential
system process
regulation of cellular process
response to stimulus
signaling
modulation of chemical synaptic transmission
regulation of system process
regulation of signal transduction
chemical synaptic transmission, postsynaptic
cell communication
synaptic signaling
modulation of excitatory postsynaptic potential
cellular response to stimulus
multicellular organismal process
regulation of postsynaptic membrane potential
system process
regulation of cellular process
response to stimulus
signaling
modulation of chemical synaptic transmission
regulation of system process
regulation of signal transduction
chemical synaptic transmission, postsynaptic
cell communication
synaptic signaling
modulation of excitatory postsynaptic potential
regulation of multicellular organismal process
signal transduction
regulation of biological quality
trans-synaptic signaling
regulation of biological process
regulation of signaling
cell surface receptor signaling pathway
nervous system process
biological regulation
cell-cell signaling
chemical synaptic transmission
regulation of nervous system process
regulation of trans-synaptic signaling
regulation of response to stimulus
anterograde trans-synaptic signaling
regulation of cell communication
cellular process
excitatory postsynaptic potential
regulation of membrane potential
regulation of localization
import into cell
cellular localization
regulation of cellular component organization
transport
synaptic vesicle cycle
regulation of synaptic vesicle recycling
vesicle-mediated transport
presynaptic endocytosis
vesicle-mediated transport in synapse
cellular component organization
localization
synaptic vesicle recycling
regulation of synaptic vesicle endocytosis
establishment of localization in cell
cellular component organization or biogenesis
regulation of endocytosis
synaptic vesicle endocytosis
regulation of transport
regulation of vesicle-mediated transport
establishment of localization
endocytosis
synaptic vesicle uncoating
protein-containing complex disassembly
vesicle uncoating
cellular component disassembly
clathrin coat disassembly
protein-containing complex organization
protein depolymerization
positive regulation of cellular component organization
positive regulation of synaptic vesicle recycling
positive regulation of biological process
positive regulation of endocytosis
positive regulation of cellular process
positive regulation of synaptic vesicle endocytosis
positive regulation of transport
Less
intracellular organelle
intracellular anatomical structure
podosome
cytoskeleton
organelle
intracellular non-membrane-bounded organelle
cellular anatomical entity
actin cytoskeleton
non-membrane-bounded organelle
anchoring junction
cell junction
presynapse
synapse
cytoplasm
intracellular organelle
intracellular anatomical structure
podosome
cytoskeleton
organelle
intracellular non-membrane-bounded organelle
cellular anatomical entity
actin cytoskeleton
non-membrane-bounded organelle
anchoring junction
cell junction
presynapse
synapse
cytoplasm
glutamatergic synapse
neuron to neuron synapse
hippocampal mossy fiber to CA3 synapse
membrane-bounded organelle
endosome membrane
early endosome
endosome
membrane
intracellular vesicle
early endosome membrane
intracellular membrane-bounded organelle
endomembrane system
cytoplasmic vesicle membrane
bounding membrane of organelle
cytoplasmic vesicle
vesicle membrane
vesicle
organelle membrane
Schaffer collateral - CA1 synapse
postsynaptic density, intracellular component
postsynaptic specialization
postsynaptic specialization, intracellular component
postsynaptic density
postsynapse
asymmetric synapse
cell projection
Less
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR004148
BAR domain
Domain
A
IPR050384
Endophilin/SH3RF
Family
A
IPR036028
SH3-like domain superfamily
Homologous Superfamily
A
IPR027267
AH/BAR domain superfamily
Homologous Superfamily
A
IPR001452
SH3 domain
Domain
A
IPR035824
Endophilin-A, SH3 domain
Domain
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