3BSO
Norwalk Virus polymerase bound to cytidine 5'-triphosphate and primer-template RNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3bsoa_ | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | RNA-dependent RNA-polymerase | Viral RNA polymerase | (Norwalk virus ) [TaxId: 11983 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RdRP_1_C | e3bsoA1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: RdRP_1_C | ECOD (1.6) |
A | RdRP_1_N | e3bsoA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_1_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 6.10.250.3230 | Special | Helix non-globular | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
A | 3.30.70.270 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Reverse transcriptase/Diguanylate cyclase domain | CATH (4.3.0) |
A | 1.20.960.20 | Mainly Alpha | Up-down Bundle | Mitochondrial Import Receptor Subunit Tom20 | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00680 | Viral RNA-dependent RNA polymerase (RdRP_1) | Viral RNA-dependent RNA polymerase | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009003 | Peptidase S1, PA clan | Homologous Superfamily | |
IPR001205 | RNA-directed RNA polymerase, C-terminal domain | Domain | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR001665 | Norovirus peptidase C37 | Domain | |
IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
IPR043504 | Peptidase S1, PA clan, chymotrypsin-like fold | Homologous Superfamily | |
IPR007094 | RNA-directed RNA polymerase, catalytic domain | Domain |